Strain Fitness in Shewanella oneidensis MR-1 around SO2436

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,546,230	+				-0.4
2,546,257	+				-1.0
2,546,266	+				+0.2
2,546,269	-				-1.6
2,546,294	-				-0.4
2,546,304	-				+0.9
2,546,352	-				+2.2
2,546,595	+		SO2435	0.15	-0.3
2,546,654	+		SO2435	0.23	-0.1
2,546,813	+		SO2435	0.45	-1.5
2,546,869	+		SO2435	0.52	+0.8
2,546,869	+		SO2435	0.52	+1.0
2,546,884	+		SO2435	0.54	-1.3
2,547,153	+				-2.1
2,547,155	-				-0.9
2,547,161	-				-2.8
2,547,164	+				+0.6
2,547,747	-		SO2436	0.54	-0.6
2,547,779	+		SO2436	0.57	-0.5
2,547,787	-		SO2436	0.58	-1.3
2,547,986	+		SO2436	0.78	-2.4
2,548,027	-		SO2436	0.82	-0.8
2,548,076	-		SO2436	0.87	+1.0
2,548,204	-				+1.6
2,548,228	+				-0.9
2,548,228	+				+0.9
2,548,267	+				+0.3
2,548,267	+				-0.6
2,548,267	+				+0.1
2,548,349	+				+1.2
2,548,460	-				-1.6
2,548,466	+		SO2437	0.10	+0.1
2,548,474	-		SO2437	0.11	+1.3
2,548,474	-		SO2437	0.11	+3.2
2,548,568	+		SO2437	0.16	-0.5
2,548,576	-		SO2437	0.16	-0.4
2,548,792	-		SO2437	0.27	+0.9
2,548,805	+		SO2437	0.28	-0.6
2,548,805	+		SO2437	0.28	-0.6
2,548,876	+		SO2437	0.32	-1.2
2,549,198	+		SO2437	0.49	+0.8