Strain Fitness in Shewanella oneidensis MR-1 around SO2380

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,482,538	+				+0.2
2,482,571	-				-2.6
2,483,022	-		SO2380	0.29	-0.8
2,483,022	-		SO2380	0.29	+0.3
2,483,022	-		SO2380	0.29	-0.0
2,483,110	+		SO2380	0.33	-0.8
2,483,205	-		SO2380	0.38	+0.6
2,483,232	-		SO2380	0.39	-0.4
2,483,442	+		SO2380	0.50	-0.5
2,483,617	+		SO2380	0.59	-2.4
2,483,625	-		SO2380	0.59	+0.4
2,483,771	-		SO2380	0.67	+0.1
2,483,878	+		SO2380	0.72	-0.4
2,483,979	-		SO2380	0.77	-0.6
2,484,386	-				-2.2
2,484,424	+				-0.6
2,484,460	+				+1.6
2,484,486	+				+1.0
2,484,548	-		SO2381	0.21	+0.0
2,484,775	+				+1.9
2,484,782	-				+0.2
2,484,803	-				+2.4
2,484,874	-				+0.4
2,484,880	+				+0.1
2,484,891	-				+1.1
2,484,902	+				+0.0
2,485,056	+		SO2383	0.15	-0.0
2,485,064	-		SO2383	0.16	-0.7
2,485,066	+		SO2383	0.17	+1.6
2,485,074	-		SO2383	0.18	+1.0
2,485,074	-		SO2383	0.18	-0.2
2,485,088	-		SO2383	0.21	-1.4
2,485,155	-		SO2383	0.34	-0.5
2,485,176	+		SO2383	0.38	+0.4
2,485,176	+		SO2383	0.38	-0.7
2,485,227	+		SO2383	0.49	+0.1
2,485,291	+		SO2383	0.61	+0.8
2,485,297	-		SO2383	0.62	-0.5
2,485,299	-		SO2383	0.63	-0.0
2,485,301	+		SO2383	0.63	+1.2
2,485,308	+		SO2383	0.65	-1.4
2,485,309	-		SO2383	0.65	+1.8
2,485,316	-		SO2383	0.66	+0.8
2,485,316	-		SO2383	0.66	+0.7
2,485,316	-		SO2383	0.66	+0.4
2,485,336	+		SO2383	0.70	+0.9
2,485,336	-		SO2383	0.70	-0.1
2,485,343	+		SO2383	0.72	+1.2
2,485,350	+		SO2383	0.73	-0.7
2,485,351	+		SO2383	0.73	-0.2
2,485,351	-		SO2383	0.73	+0.7
2,485,351	-		SO2383	0.73	+2.2
2,485,351	-		SO2383	0.73	+1.1
2,485,359	+		SO2383	0.75	+1.4
2,485,367	-		SO2383	0.76	-0.6