Strain Fitness in Shewanella oneidensis MR-1 around SO2298

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,408,961	-	ribE-1	SO2296	0.24	+1.2
2,409,119	-	ribE-1	SO2296	0.50	-0.3
2,409,119	-	ribE-1	SO2296	0.50	-0.8
2,409,301	+	ribE-1	SO2296	0.79	+0.9
2,409,309	-	ribE-1	SO2296	0.80	+0.7
2,409,468	+		SO2297	0.14	+0.1
2,409,503	+		SO2297	0.31	-1.0
2,409,683	-				+0.9
2,409,698	+				-0.1
2,409,698	+				-0.7
2,409,706	-				-0.3
2,409,706	-				+1.6
2,409,828	+				+1.6
2,409,842	+				-1.8
2,409,854	+				-0.8
2,409,854	+				+1.1
2,409,854	+				-1.0
2,409,867	-				-0.0
2,409,890	+				-0.2
2,409,898	-				-0.4
2,409,996	-		SO2298	0.45	-2.2
2,410,056	+		SO2298	0.71	-0.4
2,410,122	+				-0.0
2,410,173	+				-1.3
2,410,181	-				-0.4
2,410,305	-				+0.0