Strain Fitness in Shewanella oneidensis MR-1 around SO2255

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,367,220	-		SO2254	0.37	-1.5
2,367,303	+		SO2254	0.45	-1.3
2,367,311	-		SO2254	0.46	-0.3
2,367,311	-		SO2254	0.46	+0.4
2,367,330	+		SO2254	0.48	+0.6
2,367,496	+		SO2254	0.65	+2.0
2,367,734	+		SO2254	0.89	+0.7
2,367,797	+				+0.6
2,368,039	-				+0.9
2,368,117	-				-1.4
2,368,192	+				+2.4
2,368,440	-	mfd	SO2255	0.17	-0.1
2,369,033	-	mfd	SO2255	0.34	+0.6
2,369,427	-	mfd	SO2255	0.45	+2.2
2,369,765	+	mfd	SO2255	0.55	-1.5
2,369,811	+	mfd	SO2255	0.56	-0.6
2,369,821	+	mfd	SO2255	0.56	+0.2
2,369,829	-	mfd	SO2255	0.57	+0.6
2,369,838	+	mfd	SO2255	0.57	+1.6
2,369,838	+	mfd	SO2255	0.57	-2.1
2,370,014	-	mfd	SO2255	0.62	+0.6
2,370,032	-	mfd	SO2255	0.63	+0.2
2,370,194	+	mfd	SO2255	0.67	-1.2
2,370,202	-	mfd	SO2255	0.67	+0.4
2,370,284	+	mfd	SO2255	0.70	-0.7
2,370,338	-	mfd	SO2255	0.71	+0.2
2,370,468	+	mfd	SO2255	0.75	-0.4
2,370,606	+	mfd	SO2255	0.79	+0.2
2,370,642	+	mfd	SO2255	0.80	-1.8
2,370,704	+	mfd	SO2255	0.82	-0.7
2,370,712	-	mfd	SO2255	0.82	-1.2
2,371,123	-				+0.7
2,371,161	+				+2.3
2,371,169	-				-0.1
2,371,224	-				-0.5
2,371,621	-		SO2256	0.31	+0.8
2,371,629	-		SO2256	0.32	-1.8
2,371,809	-		SO2256	0.61	+0.0
2,371,853	-		SO2256	0.68	-2.0