Strain Fitness in Shewanella oneidensis MR-1 around SO2208

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,319,153	+				+0.4
2,319,155	-				+1.2
2,319,221	+				+1.4
2,319,371	+		SO2205	0.82	-1.7
2,319,437	+				-1.7
2,319,437	+				-1.1
2,319,610	-				-1.2
2,319,750	+		SO2207	0.17	-0.1
2,319,761	+		SO2207	0.20	+0.9
2,319,761	+		SO2207	0.20	-0.5
2,319,836	+		SO2207	0.38	+0.1
2,319,836	+		SO2207	0.38	+0.9
2,319,946	+		SO2207	0.65	+0.4
2,320,145	+		SO2208	0.12	-1.2
2,320,263	+		SO2208	0.35	-0.6
2,320,467	-		SO2208	0.74	-0.9
2,320,554	+				-0.3
2,320,653	+				-0.9
2,320,661	-				+0.3
2,320,661	-				-0.3
2,320,668	+				-0.5
2,320,676	-				+0.8
2,320,719	+				-0.8
2,320,731	+				-0.1
2,320,731	+				+2.2
2,320,739	-				+0.4
2,320,739	-				+1.2
2,320,767	-				-0.7
2,320,970	+				+0.3
2,320,970	+				-0.8
2,320,978	-				-0.4
2,320,978	-				-0.5
2,321,047	-				-0.5
2,321,062	-				-0.7
2,321,062	-				+1.6