Strain Fitness in Shewanella oneidensis MR-1 around SO2194

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,305,558	-				+1.4
2,305,819	+		SO2193	0.27	+0.2
2,305,827	-		SO2193	0.28	+2.8
2,305,827	-		SO2193	0.28	-0.4
2,306,107	-		SO2193	0.69	+1.4
2,306,120	+		SO2193	0.71	+0.2
2,306,241	-		SO2193	0.88	-1.5
2,306,241	-		SO2193	0.88	-0.8
2,306,241	-		SO2193	0.88	-0.3
2,306,357	-				+1.1
2,306,579	+				-0.3
2,306,592	-				-0.6
2,306,649	-		SO2194	0.12	-2.2
2,306,717	+		SO2194	0.20	-0.9
2,306,750	-		SO2194	0.24	-3.1
2,306,814	-		SO2194	0.32	+0.6
2,307,083	+		SO2194	0.65	-1.3
2,307,344	-				+1.4
2,307,438	-				+3.2
2,307,494	-				-0.1
2,307,496	-				-0.0
2,307,512	+				-0.0
2,307,520	-				+2.3
2,307,520	-				+0.9
2,307,522	-				-0.3
2,307,534	+				-0.7
2,307,896	+		SO2195	0.21	-0.5
2,307,904	-		SO2195	0.22	+1.3
2,307,953	-		SO2195	0.24	+0.6
2,308,059	-		SO2195	0.28	-1.3
2,308,107	-		SO2195	0.30	-0.2
2,308,192	+		SO2195	0.34	-1.2
2,308,350	+		SO2195	0.41	+0.2
2,308,358	-		SO2195	0.41	-0.3