Strain Fitness in Shewanella oneidensis MR-1 around SO2124

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,229,149	+		SO2123	0.56	-0.4
2,229,179	+		SO2123	0.57	+0.3
2,229,184	+		SO2123	0.57	+0.5
2,229,187	-		SO2123	0.58	+0.3
2,229,199	+		SO2123	0.58	-0.1
2,229,200	-		SO2123	0.58	-0.0
2,229,244	+		SO2123	0.61	+0.0
2,229,354	-		SO2123	0.66	-1.9
2,229,359	+		SO2123	0.66	-1.2
2,229,410	+		SO2123	0.69	+0.5
2,229,476	-		SO2123	0.72	-1.0
2,229,478	-		SO2123	0.72	-0.3
2,229,497	-		SO2123	0.73	+0.0
2,229,526	-		SO2123	0.75	-1.0
2,229,535	+		SO2123	0.75	-0.4
2,229,781	+		SO2123	0.88	-1.1
2,229,899	-				-1.1
2,229,909	-				-0.0
2,229,967	-				-1.7
2,229,981	-				+0.7
2,229,983	+				-0.6
2,229,991	-				+0.5
2,230,001	-				+0.5
2,230,076	-				-1.0
2,230,078	-				-2.3
2,230,124	+	cheR-1	SO2124	0.10	+1.1
2,230,207	+	cheR-1	SO2124	0.20	-0.2
2,230,215	+	cheR-1	SO2124	0.21	-1.5
2,230,217	+	cheR-1	SO2124	0.21	-0.8
2,230,217	+	cheR-1	SO2124	0.21	+1.2
2,230,325	+	cheR-1	SO2124	0.34	+0.2
2,230,340	+	cheR-1	SO2124	0.36	-0.1
2,230,350	+	cheR-1	SO2124	0.37	+1.3
2,230,398	+	cheR-1	SO2124	0.43	+0.4
2,230,469	-	cheR-1	SO2124	0.52	+1.7
2,230,555	+	cheR-1	SO2124	0.62	-0.3
2,230,558	-	cheR-1	SO2124	0.62	+0.5
2,230,560	+	cheR-1	SO2124	0.63	+1.7
2,230,564	+	cheR-1	SO2124	0.63	-2.7
2,230,568	-	cheR-1	SO2124	0.64	+0.6
2,230,576	+	cheR-1	SO2124	0.65	+1.9
2,230,577	+	cheR-1	SO2124	0.65	+1.3
2,230,634	+	cheR-1	SO2124	0.71	-1.3
2,230,642	-	cheR-1	SO2124	0.72	-0.3
2,230,760	-	cheR-1	SO2124	0.87	-0.4
2,230,762	-	cheR-1	SO2124	0.87	-0.1
2,230,801	+				+0.9
2,230,833	-				-0.8
2,231,150	+	cheD-1	SO2125	0.48	+0.3
2,231,173	-	cheD-1	SO2125	0.52	-1.7
2,231,178	-	cheD-1	SO2125	0.53	-0.3
2,231,488	+				+0.5
2,231,495	-				-2.4
2,231,593	+	cheB-1	SO2126	0.11	+1.7
2,231,606	-	cheB-1	SO2126	0.12	+2.5
2,231,606	-	cheB-1	SO2126	0.12	-0.2
2,231,751	-	cheB-1	SO2126	0.26	-1.9
2,231,772	-	cheB-1	SO2126	0.28	+0.4
2,231,787	+	cheB-1	SO2126	0.29	-0.2
2,231,793	+	cheB-1	SO2126	0.30	+0.3
2,231,797	+	cheB-1	SO2126	0.30	-1.5
2,231,800	-	cheB-1	SO2126	0.31	+1.4
2,231,807	+	cheB-1	SO2126	0.31	-0.5