Strain Fitness in Shewanella oneidensis MR-1 around SO2114

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,214,901	-		SO2113	0.77	-0.6
2,214,961	-		SO2113	0.78	-0.8
2,215,070	+		SO2113	0.81	-2.4
2,215,116	+		SO2113	0.82	-1.6
2,215,316	+		SO2113	0.87	-1.2
2,215,323	-		SO2113	0.87	+0.3
2,215,672	+				-1.0
2,215,679	-				-1.7
2,215,680	-				-1.4
2,215,819	-				+1.5
2,215,883	-				-2.9
2,215,916	+				-0.0
2,216,068	-		SO2114	0.11	-2.6
2,216,290	+		SO2114	0.23	-2.4
2,216,351	-		SO2114	0.27	-1.6
2,216,373	-		SO2114	0.28	-0.3
2,216,381	+		SO2114	0.28	-0.7
2,216,389	-		SO2114	0.29	-3.1
2,216,427	+		SO2114	0.31	-1.5
2,216,581	+		SO2114	0.39	-1.5
2,216,593	+		SO2114	0.40	-1.5
2,216,646	-		SO2114	0.42	+1.9
2,216,705	+		SO2114	0.46	-2.0
2,216,724	+		SO2114	0.47	-2.4
2,216,807	-		SO2114	0.51	-1.8
2,216,834	+		SO2114	0.53	-1.8
2,217,088	-		SO2114	0.66	-1.0
2,217,150	+		SO2114	0.70	-1.3
2,217,150	+		SO2114	0.70	-3.4
2,217,286	-		SO2114	0.77	-2.3
2,217,286	-		SO2114	0.77	-3.2
2,217,469	-		SO2114	0.87	-0.0
2,217,608	+				-0.3
2,217,731	-				+3.4
2,217,970	+				-0.0
2,218,031	-		SO2115	0.15	-0.1
2,218,032	-		SO2115	0.15	+1.6
2,218,231	-		SO2115	0.35	+0.4
2,218,313	-		SO2115	0.44	+0.5
2,218,319	-		SO2115	0.44	+1.3
2,218,395	+		SO2115	0.52	-0.2
2,218,395	+		SO2115	0.52	-1.6
2,218,504	+		SO2115	0.63	-0.2
2,218,513	-		SO2115	0.64	+1.8
2,218,524	+		SO2115	0.65	+0.5
2,218,571	+		SO2115	0.70	-0.6