Strain Fitness in Shewanella oneidensis MR-1 around SO2107

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,203,662	+				-0.5
2,203,706	+				+0.6
2,203,706	+				+0.2
2,203,760	-				+0.5
2,203,764	-				-2.0
2,203,765	-				+0.3
2,203,850	-				-1.2
2,204,055	-				-1.5
2,204,150	+				-0.7
2,204,175	+				+0.1
2,204,176	+				-1.1
2,204,230	+				-0.7
2,204,230	+				-2.2
2,204,253	+				-0.1
2,204,269	+				-0.5
2,204,285	+				-1.6
2,204,428	+				-2.6
2,204,482	+	mdoG-1	SO2107	0.13	-1.9
2,204,495	-	mdoG-1	SO2107	0.14	-1.4
2,204,650	+	mdoG-1	SO2107	0.24	-2.4
2,204,707	+	mdoG-1	SO2107	0.28	-1.5
2,204,785	+	mdoG-1	SO2107	0.33	-1.6
2,204,830	+	mdoG-1	SO2107	0.36	+0.5
2,204,838	-	mdoG-1	SO2107	0.37	-1.5
2,205,017	-	mdoG-1	SO2107	0.49	-1.5
2,205,227	-	mdoG-1	SO2107	0.63	-0.8
2,205,254	-	mdoG-1	SO2107	0.65	-1.2
2,205,277	+	mdoG-1	SO2107	0.66	-1.3
2,205,277	+	mdoG-1	SO2107	0.66	-2.0
2,205,390	+	mdoG-1	SO2107	0.74	-1.6
2,205,854	-				+0.5
2,205,933	+				-1.4
2,206,500	+	mdoH	SO2108	0.32	-0.8
2,206,771	-	mdoH	SO2108	0.44	+0.5
2,206,779	+	mdoH	SO2108	0.44	-1.8