Strain Fitness in Shewanella oneidensis MR-1 around SO2097

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,193,511	-		SO2095	0.78	-0.1
2,193,736	+				-0.9
2,193,744	-				-2.1
2,193,863	+				-0.1
2,193,873	+				+1.3
2,193,930	+				-0.0
2,193,962	-		SO2096	0.14	+1.8
2,193,964	+		SO2096	0.15	-0.9
2,194,009	+		SO2096	0.22	+1.0
2,194,033	+		SO2096	0.26	+0.9
2,194,034	-		SO2096	0.27	-0.2
2,194,086	+		SO2096	0.36	-0.4
2,194,086	+		SO2096	0.36	+0.0
2,194,111	+		SO2096	0.40	-0.1
2,194,187	-		SO2096	0.53	+2.1
2,194,347	+		SO2096	0.81	-1.2
2,194,347	+		SO2096	0.81	+0.5
2,194,347	+		SO2096	0.81	-0.8
2,194,355	-		SO2096	0.82	-0.1
2,194,540	+	hydC	SO2097	0.11	+0.1
2,194,657	-	hydC	SO2097	0.28	+0.5
2,194,657	-	hydC	SO2097	0.28	-1.0
2,194,679	+	hydC	SO2097	0.32	+0.3
2,194,679	+	hydC	SO2097	0.32	-0.1
2,194,741	+	hydC	SO2097	0.41	-0.4
2,194,749	-	hydC	SO2097	0.42	-0.3
2,194,749	-	hydC	SO2097	0.42	+0.8
2,195,061	-	hydC	SO2097	0.88	-0.2
2,195,068	+	hydC	SO2097	0.89	-1.6
2,195,224	+				-1.3
2,195,280	-				-1.1
2,195,323	+				-0.6
2,195,468	-	hyaB	SO2098	0.18	+0.2
2,195,587	-	hyaB	SO2098	0.25	-0.2
2,195,613	-	hyaB	SO2098	0.26	+0.9
2,195,614	-	hyaB	SO2098	0.27	-0.2
2,195,641	-	hyaB	SO2098	0.28	-1.0
2,195,792	+	hyaB	SO2098	0.37	-0.6
2,195,800	-	hyaB	SO2098	0.37	+0.1
2,195,840	+	hyaB	SO2098	0.40	-1.0
2,195,883	+	hyaB	SO2098	0.42	-1.0
2,195,891	-	hyaB	SO2098	0.43	+0.0
2,195,913	-	hyaB	SO2098	0.44	-0.5
2,196,063	+	hyaB	SO2098	0.53	+0.8
2,196,112	+	hyaB	SO2098	0.56	+0.5