Strain Fitness in Shewanella oneidensis MR-1 around SO2093

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,187,537	-	hypD	SO2091	0.44	+0.7
2,187,557	+	hypD	SO2091	0.46	-0.3
2,187,566	+	hypD	SO2091	0.47	-0.6
2,187,595	-	hypD	SO2091	0.49	-1.2
2,187,718	+	hypD	SO2091	0.60	-0.9
2,187,780	+	hypD	SO2091	0.66	-1.6
2,187,880	+	hypD	SO2091	0.74	+0.3
2,187,880	+	hypD	SO2091	0.74	-1.8
2,187,903	+	hypD	SO2091	0.76	+0.3
2,187,949	+	hypD	SO2091	0.80	-1.3
2,188,070	-				-0.3
2,188,075	+				-1.6
2,188,289	-	hypC	SO2092	0.22	+0.5
2,188,404	+	hypC	SO2092	0.69	-0.8
2,188,404	+	hypC	SO2092	0.69	-0.5
2,188,404	+	hypC	SO2092	0.69	-0.8
2,188,509	-				-0.3
2,188,853	+	hypB	SO2093	0.47	-0.8
2,188,861	-	hypB	SO2093	0.48	+2.3
2,188,861	-	hypB	SO2093	0.48	+0.9
2,188,954	+	hypB	SO2093	0.60	+1.0
2,188,975	+	hypB	SO2093	0.62	-1.3
2,188,996	+	hypB	SO2093	0.65	-2.1
2,189,004	-	hypB	SO2093	0.66	-1.1
2,189,060	-	hypB	SO2093	0.73	+1.2
2,189,079	+	hypB	SO2093	0.75	-1.2
2,189,079	+	hypB	SO2093	0.75	-0.4
2,189,158	-	hypB	SO2093	0.85	+0.3
2,189,472	-				-0.7
2,189,513	+				+0.1
2,189,545	-				-0.4
2,189,685	+				-1.2
2,189,721	+				+0.6
2,189,721	+				+1.0
2,189,729	-				+0.5
2,189,781	+	hypF	SO2094	0.12	-0.2
2,190,027	-	hypF	SO2094	0.22	+0.8
2,190,222	+	hypF	SO2094	0.30	+1.1
2,190,267	-	hypF	SO2094	0.32	+2.7