Strain Fitness in Shewanella oneidensis MR-1 around SO2065

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,161,341	-		SO2064	0.76	-0.7
2,161,537	+		SO2064	0.82	-0.6
2,161,627	-		SO2064	0.85	+0.7
2,161,659	-		SO2064	0.86	-0.1
2,161,819	-				-1.5
2,161,889	+				+2.6
2,161,897	-				-1.5
2,161,897	-				-2.1
2,161,939	-				-2.4
2,162,328	-				+1.1
2,162,362	-				-0.6
2,162,392	-				+1.6
2,162,519	-	tyrP	SO2065	0.16	+1.2
2,162,553	+	tyrP	SO2065	0.19	+0.3
2,162,615	+	tyrP	SO2065	0.24	+0.6
2,162,717	-	tyrP	SO2065	0.33	+0.9
2,162,770	-	tyrP	SO2065	0.37	-0.5
2,162,832	-	tyrP	SO2065	0.42	+1.2
2,162,838	+	tyrP	SO2065	0.43	+0.5
2,162,838	+	tyrP	SO2065	0.43	-0.9
2,162,846	-	tyrP	SO2065	0.44	+2.4
2,162,866	-	tyrP	SO2065	0.45	+3.5
2,163,004	+	tyrP	SO2065	0.57	+0.7
2,163,101	-	tyrP	SO2065	0.65	-0.9
2,163,101	-	tyrP	SO2065	0.65	-0.8
2,163,354	+	tyrP	SO2065	0.86	+0.3
2,163,359	+	tyrP	SO2065	0.87	+1.5
2,163,424	-				-0.3
2,163,424	-				+0.1
2,163,458	+				-2.0
2,163,630	+				+0.1
2,163,657	+				+1.7
2,163,703	-				+1.1
2,163,876	-				-0.8
2,164,152	+				-0.9
2,164,153	-				+0.1
2,164,207	+	hisI	SO2067	0.18	-1.1
2,164,318	+	hisI	SO2067	0.35	+0.6
2,164,511	+	hisI	SO2067	0.65	+2.1