Strain Fitness in Shewanella oneidensis MR-1 around SO2048

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,146,512	+		SO2047	0.67	-1.0
2,146,539	+		SO2047	0.68	-0.2
2,146,590	+		SO2047	0.71	+0.6
2,146,590	+		SO2047	0.71	-1.3
2,146,600	+		SO2047	0.71	+0.4
2,146,603	-		SO2047	0.71	+0.8
2,146,607	+		SO2047	0.72	+0.9
2,146,650	-		SO2047	0.74	-0.4
2,146,720	+		SO2047	0.77	-1.3
2,146,782	-		SO2047	0.80	-1.9
2,146,792	+		SO2047	0.80	+1.1
2,146,792	-		SO2047	0.80	+1.1
2,146,810	-		SO2047	0.81	-0.6
2,146,810	-		SO2047	0.81	-0.9
2,146,815	+		SO2047	0.82	-0.2
2,146,833	-		SO2047	0.82	+1.6
2,146,942	-		SO2047	0.88	-0.0
2,146,965	+		SO2047	0.89	-1.5
2,146,973	-		SO2047	0.89	-1.0
2,146,973	-		SO2047	0.89	+0.2
2,146,973	-		SO2047	0.89	-0.9
2,146,973	-		SO2047	0.89	-0.5
2,147,012	+				+0.3
2,147,020	-				-0.1
2,147,025	+				+0.9
2,147,032	+				-0.9
2,147,269	+				-0.6
2,147,421	+				-1.5
2,147,493	-				-1.8
2,147,630	-		SO2048	0.11	-1.6
2,147,682	+		SO2048	0.15	-2.7
2,147,692	-		SO2048	0.15	-1.1
2,147,933	+		SO2048	0.30	-2.3
2,147,997	+		SO2048	0.34	-2.6
2,147,997	+		SO2048	0.34	-1.2
2,148,159	+		SO2048	0.44	+0.5
2,148,218	+		SO2048	0.47	-2.7
2,148,218	+		SO2048	0.47	+1.1
2,148,226	-		SO2048	0.48	-1.1
2,148,334	+		SO2048	0.55	-1.4
2,148,354	-		SO2048	0.56	-1.1
2,148,415	+		SO2048	0.60	-3.3
2,148,417	+		SO2048	0.60	-2.2
2,148,427	-		SO2048	0.60	-0.1
2,148,447	-		SO2048	0.62	-1.3
2,148,545	-		SO2048	0.68	-0.9
2,148,674	+		SO2048	0.76	-1.3
2,148,682	-		SO2048	0.76	-0.7
2,148,684	-		SO2048	0.76	-0.9
2,148,684	-		SO2048	0.76	-0.8
2,148,758	-		SO2048	0.81	-0.3
2,148,862	-		SO2048	0.87	-0.4
2,149,477	-		SO2049	0.19	-1.1
2,149,612	+		SO2049	0.33	-2.1
2,149,622	+		SO2049	0.34	+0.5
2,149,789	-		SO2049	0.51	-0.3
2,149,886	+		SO2049	0.61	+1.2