Strain Fitness in Shewanella oneidensis MR-1 around SO1989

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,090,388	+				+0.0
2,090,478	-				+0.1
2,090,502	+				+0.5
2,090,542	+				+1.3
2,090,550	-				+2.7
2,090,645	+		SO1988	0.17	-1.2
2,090,660	-		SO1988	0.20	+1.5
2,090,664	+		SO1988	0.20	-0.4
2,090,700	-		SO1988	0.26	-0.4
2,090,767	-		SO1988	0.37	+1.1
2,090,772	-		SO1988	0.38	-0.3
2,090,777	-		SO1988	0.39	+1.2
2,090,788	+		SO1988	0.41	+1.5
2,090,788	+		SO1988	0.41	-0.8
2,090,796	-		SO1988	0.42	-0.7
2,090,796	-		SO1988	0.42	-1.3
2,090,800	+		SO1988	0.43	-1.2
2,090,800	+		SO1988	0.43	-0.0
2,090,800	+		SO1988	0.43	+1.5
2,090,800	+		SO1988	0.43	+0.8
2,090,800	+		SO1988	0.43	-0.0
2,090,800	+		SO1988	0.43	+0.5
2,090,800	+		SO1988	0.43	+0.8
2,090,800	+		SO1988	0.43	+0.6
2,090,800	+		SO1988	0.43	-0.1
2,090,808	-		SO1988	0.44	+0.9
2,090,808	-		SO1988	0.44	-0.9
2,090,808	-		SO1988	0.44	+0.1
2,090,808	-		SO1988	0.44	-1.5
2,090,808	-		SO1988	0.44	-0.1
2,090,808	-		SO1988	0.44	-1.4
2,090,808	-		SO1988	0.44	-0.2
2,090,808	-		SO1988	0.44	+1.2
2,090,808	-		SO1988	0.44	-1.0
2,090,853	-		SO1988	0.51	+0.8
2,090,861	+		SO1988	0.53	+1.0
2,090,861	+		SO1988	0.53	+0.6
2,090,881	-		SO1988	0.56	+2.0
2,090,997	+		SO1988	0.75	+0.0
2,091,004	+		SO1988	0.76	-0.4
2,091,121	+				-1.4
2,091,121	+				+0.0
2,091,125	+				-0.5
2,091,146	+				+2.0
2,091,147	+				-1.1
2,091,155	-				+0.3
2,091,161	-				-0.1
2,091,170	-				-1.5
2,091,239	+				+0.2
2,091,328	+				-0.5
2,091,328	-				+0.2
2,091,607	-	cheV-1	SO1989	0.25	-1.9
2,091,612	+	cheV-1	SO1989	0.25	+1.5
2,091,614	+	cheV-1	SO1989	0.25	-0.6
2,091,675	+	cheV-1	SO1989	0.32	+0.2
2,091,675	+	cheV-1	SO1989	0.32	-1.2
2,091,683	-	cheV-1	SO1989	0.33	+1.8
2,091,809	-	cheV-1	SO1989	0.46	+0.6
2,091,832	-	cheV-1	SO1989	0.48	+0.7
2,091,845	+	cheV-1	SO1989	0.50	-0.9
2,091,875	+	cheV-1	SO1989	0.53	+0.5
2,091,891	+	cheV-1	SO1989	0.55	-0.2
2,092,123	+	cheV-1	SO1989	0.79	-0.1
2,092,123	+	cheV-1	SO1989	0.79	-0.4
2,092,157	+	cheV-1	SO1989	0.83	-0.1
2,092,157	+	cheV-1	SO1989	0.83	+0.9
2,092,256	+				-0.1
2,092,274	+				+1.1
2,092,274	+				+0.6
2,092,274	+				+1.6
2,092,302	-				+0.1
2,092,368	+				-1.3
2,092,376	-				+0.1
2,092,378	-				+0.2
2,092,412	+				-0.6
2,092,444	-				+0.5
2,092,482	-				+0.7
2,092,501	+				+1.1
2,092,638	-		SO1990	0.20	-1.2
2,092,739	-		SO1990	0.36	-0.9
2,092,746	-		SO1990	0.37	-0.9
2,092,889	-		SO1990	0.59	-0.1
2,092,917	-		SO1990	0.63	+2.0
2,092,953	+		SO1990	0.69	-0.3
2,092,998	+		SO1990	0.76	-0.4
2,093,098	-				-0.1
2,093,201	+				+0.7
2,093,209	-				-0.7