Strain Fitness in Shewanella oneidensis MR-1 around SO1947

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
2,049,336	-	phoP	SO1946	0.33	+4.6
2,049,427	+	phoP	SO1946	0.46	+4.2
2,049,437	+	phoP	SO1946	0.48	+3.7
2,049,514	+	phoP	SO1946	0.59	+4.8
2,049,559	+	phoP	SO1946	0.66	+4.5
2,049,601	+	phoP	SO1946	0.72	+3.9
2,049,709	+	phoP	SO1946	0.88	+3.9
2,049,824	-				-0.3
2,049,908	-				-1.1
2,050,057	+		SO1947	0.25	+0.6
2,050,057	+		SO1947	0.25	+1.0
2,050,067	+		SO1947	0.28	-0.8
2,050,249	-		SO1947	0.80	-1.8
2,050,314	-				+1.1
2,050,345	+				-2.0
2,050,429	+				-0.1
2,050,434	+				+0.3
2,050,614	-		SO1948	0.10	-0.1
2,050,866	-		SO1948	0.29	-0.8
2,050,900	-		SO1948	0.32	-0.0
2,050,946	-		SO1948	0.35	-0.4
2,050,994	+		SO1948	0.39	+1.0
2,051,057	+		SO1948	0.44	-0.6
2,051,099	+		SO1948	0.47	+3.0
2,051,182	+		SO1948	0.53	-2.3
2,051,196	+				+2.0
2,051,205	-		SO1948	0.55	+0.6
2,051,273	+		SO1948	0.60	-0.1