Strain Fitness in Shewanella oneidensis MR-1 around SO1896

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,992,427	-				+0.1
1,992,495	+				+0.0
1,992,584	+				-0.1
1,992,663	+		SO1895	0.17	+1.0
1,992,826	+		SO1895	0.36	-0.1
1,992,968	+		SO1895	0.53	-2.7
1,992,980	+		SO1895	0.54	-1.8
1,992,980	+		SO1895	0.54	+0.7
1,993,056	+		SO1895	0.63	-1.6
1,993,228	+		SO1895	0.83	-1.4
1,993,261	+		SO1895	0.86	-2.0
1,993,312	+				-0.4
1,993,355	+				+1.4
1,993,583	+				-0.3
1,993,890	-	pccB-1	SO1896	0.29	-0.8
1,993,892	+	pccB-1	SO1896	0.29	-2.2
1,993,892	+	pccB-1	SO1896	0.29	+0.7
1,994,079	-	pccB-1	SO1896	0.41	-0.3
1,994,261	+	pccB-1	SO1896	0.52	-1.2
1,994,269	-	pccB-1	SO1896	0.52	-1.1
1,994,269	-	pccB-1	SO1896	0.52	-0.5
1,994,469	+	pccB-1	SO1896	0.65	+1.0
1,994,472	-	pccB-1	SO1896	0.65	-1.0
1,994,477	-	pccB-1	SO1896	0.65	-0.7
1,994,503	+	pccB-1	SO1896	0.67	+1.0
1,994,927	-				+0.0
1,995,137	+				-1.1
1,995,142	+				-0.8
1,995,169	-				-1.7
1,995,204	-				-0.6
1,995,218	+				+0.8
1,995,218	+				-1.1
1,995,419	+	ivd	SO1897	0.23	+2.2
1,995,427	-	ivd	SO1897	0.24	-0.7
1,995,427	-	ivd	SO1897	0.24	-0.2
1,995,427	-	ivd	SO1897	0.24	-1.8
1,995,563	-	ivd	SO1897	0.35	+0.2
1,995,651	+	ivd	SO1897	0.43	-2.1
1,995,681	-	ivd	SO1897	0.45	-0.1
1,995,681	-	ivd	SO1897	0.45	-1.4
1,995,776	-	ivd	SO1897	0.54	-0.6
1,995,987	+	ivd	SO1897	0.72	-1.3