Strain Fitness in Shewanella oneidensis MR-1 around SO1895

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,991,592	+		SO1894	0.56	+0.6
1,991,611	+		SO1894	0.57	-0.1
1,991,789	+		SO1894	0.65	-1.0
1,992,007	+		SO1894	0.76	-1.7
1,992,007	+		SO1894	0.76	+1.5
1,992,015	-		SO1894	0.76	-0.9
1,992,194	+		SO1894	0.85	+1.8
1,992,234	+		SO1894	0.87	-0.8
1,992,409	+				-1.7
1,992,409	+				-0.4
1,992,409	+				-2.3
1,992,409	+				-0.3
1,992,409	+				-1.1
1,992,417	-				-0.4
1,992,417	-				-0.4
1,992,417	-				-0.8
1,992,427	-				+0.1
1,992,495	+				+0.0
1,992,584	+				-0.1
1,992,663	+		SO1895	0.17	+1.0
1,992,826	+		SO1895	0.36	-0.1
1,992,968	+		SO1895	0.53	-2.7
1,992,980	+		SO1895	0.54	-1.8
1,992,980	+		SO1895	0.54	+0.7
1,993,056	+		SO1895	0.63	-1.6
1,993,228	+		SO1895	0.83	-1.4
1,993,261	+		SO1895	0.86	-2.0
1,993,312	+				-0.4
1,993,355	+				+1.4
1,993,583	+				-0.3
1,993,890	-	pccB-1	SO1896	0.29	-0.8
1,993,892	+	pccB-1	SO1896	0.29	-2.2
1,993,892	+	pccB-1	SO1896	0.29	+0.7
1,994,079	-	pccB-1	SO1896	0.41	-0.3
1,994,261	+	pccB-1	SO1896	0.52	-1.2
1,994,269	-	pccB-1	SO1896	0.52	-1.1
1,994,269	-	pccB-1	SO1896	0.52	-0.5