Strain Fitness in Shewanella oneidensis MR-1 around SO1870

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,960,802	+				+0.8
1,961,094	+				-0.9
1,961,103	-				-2.0
1,961,212	-				+0.8
1,961,265	-				-3.0
1,961,354	-				+0.4
1,961,511	+				-0.6
1,961,667	+				-0.2
1,961,675	-				-0.9
1,961,675	-				-0.5
1,961,746	+				-0.3
1,961,829	+				-0.9
1,961,844	-				+0.3
1,961,928	+				-1.1
1,961,929	+				-1.5
1,962,162	+	speA	SO1870	0.19	-0.5
1,962,279	+	speA	SO1870	0.25	+0.7
1,962,308	+	speA	SO1870	0.27	-0.5
1,962,308	+	speA	SO1870	0.27	-1.1
1,962,434	+	speA	SO1870	0.33	+0.4
1,962,588	+	speA	SO1870	0.41	-1.9
1,962,593	+	speA	SO1870	0.42	-1.3
1,962,748	+	speA	SO1870	0.50	-0.1
1,962,941	+	speA	SO1870	0.60	+0.7
1,962,954	-	speA	SO1870	0.61	+2.7
1,963,058	+	speA	SO1870	0.66	-1.6
1,963,107	+	speA	SO1870	0.68	-0.8
1,963,373	+	speA	SO1870	0.82	-0.8
1,963,673	+				-0.8
1,963,732	+				+0.2
1,963,812	+				-1.2
1,963,822	+				-0.5
1,963,830	-				+0.6
1,963,830	-				-0.9
1,963,892	+				-0.6
1,964,375	+		SO1871	0.49	-0.3
1,964,421	+		SO1871	0.54	-0.5
1,964,462	+		SO1871	0.59	+1.0
1,964,470	-		SO1871	0.59	+0.3
1,964,478	+		SO1871	0.60	-0.1
1,964,510	+		SO1871	0.64	-1.6
1,964,510	+		SO1871	0.64	+1.0
1,964,510	+		SO1871	0.64	+2.0
1,964,518	-		SO1871	0.65	-1.6
1,964,518	-		SO1871	0.65	-1.6
1,964,568	+		SO1871	0.70	+0.8
1,964,596	+		SO1871	0.73	+1.5
1,964,596	-		SO1871	0.73	-2.0
1,964,605	+		SO1871	0.74	-0.3
1,964,643	+		SO1871	0.78	-1.0