Strain Fitness in Shewanella oneidensis MR-1 around SO1860

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,950,836	+				-0.1
1,950,923	-				-1.6
1,950,923	-				+0.8
1,950,925	+				+0.2
1,950,925	+				-1.4
1,950,933	-				-0.5
1,950,933	-				-1.2
1,950,954	-				-0.5
1,950,954	-				-1.3
1,950,962	+				+0.9
1,950,985	-				+0.5
1,950,986	-				-0.0
1,951,079	+				-0.5
1,951,580	+				+2.4
1,951,596	+				+0.3
1,951,719	+				+0.0
1,951,761	-				+0.2
1,951,780	-				+1.3
1,951,780	-				-1.5
1,951,780	-				+0.7
1,951,780	-				+0.7
1,951,780	-				+0.7
1,951,782	+				-0.1
1,951,787	+				-1.4
1,951,787	+				+1.3
1,951,787	+				+0.5
1,951,787	+				-0.3
1,951,787	+				-1.0
1,951,787	+				+0.4
1,951,787	+				+1.3
1,951,795	-				+0.9
1,951,830	+				+0.7
1,951,840	+				+3.0
1,951,840	+				+0.0
1,951,840	+				-0.7
1,951,845	+				+0.0
1,951,845	+				+0.8
1,951,853	-				-0.7
1,951,853	-				+0.4
1,951,853	-				-0.1
1,951,853	-				-0.5
1,951,929	+		SO1860	0.19	-1.7
1,951,937	-		SO1860	0.20	+0.2
1,951,942	-		SO1860	0.21	-1.4
1,952,057	+		SO1860	0.39	-0.7
1,952,135	-		SO1860	0.51	+1.5
1,952,168	-		SO1860	0.56	+0.5
1,952,299	+		SO1860	0.77	+1.5
1,952,300	-		SO1860	0.77	+1.5
1,952,320	+		SO1860	0.80	-2.6
1,952,320	+		SO1860	0.80	+2.0
1,952,328	-		SO1860	0.81	+2.0
1,952,347	+		SO1860	0.84	-0.5
1,952,385	+				-0.1
1,952,391	+				-0.3
1,952,391	+				-0.8
1,952,399	-				-0.7
1,952,489	+				-0.3
1,952,565	+				+1.0
1,952,630	+				-0.1
1,952,767	+	uvrC	SO1861	0.12	+1.0
1,952,816	+	uvrC	SO1861	0.14	+1.2
1,952,824	-	uvrC	SO1861	0.15	-1.8
1,952,898	-	uvrC	SO1861	0.19	-1.3
1,952,899	+	uvrC	SO1861	0.19	+1.3
1,952,947	-	uvrC	SO1861	0.21	+1.2
1,952,953	-	uvrC	SO1861	0.22	+1.2
1,952,977	-	uvrC	SO1861	0.23	-0.2
1,953,008	+	uvrC	SO1861	0.25	+0.8
1,953,323	+	uvrC	SO1861	0.42	-1.5
1,953,326	-	uvrC	SO1861	0.42	+1.3
1,953,331	-	uvrC	SO1861	0.42	-1.4
1,953,354	-	uvrC	SO1861	0.44	-0.4
1,953,435	+	uvrC	SO1861	0.48	-0.2
1,953,435	+	uvrC	SO1861	0.48	-1.4