Strain Fitness in Shewanella oneidensis MR-1 around SO1842

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,930,381	+		SO1840	0.49	+0.5
1,930,407	-		SO1840	0.51	+0.9
1,930,511	+		SO1840	0.61	-1.1
1,930,511	+		SO1840	0.61	+0.5
1,930,511	+		SO1840	0.61	+0.6
1,930,511	+		SO1840	0.61	+0.3
1,930,519	-		SO1840	0.62	-0.3
1,930,525	+		SO1840	0.62	-1.5
1,930,526	+		SO1840	0.62	+0.3
1,930,546	+		SO1840	0.64	-1.7
1,930,694	+		SO1840	0.78	-1.3
1,930,743	+		SO1840	0.83	-1.7
1,930,972	+		SO1841	0.16	-0.2
1,930,980	-		SO1841	0.19	-0.7
1,931,023	-		SO1841	0.34	-0.3
1,931,043	+		SO1841	0.41	+0.7
1,931,133	+		SO1841	0.72	+0.0
1,931,170	+		SO1841	0.85	-0.8
1,931,390	-				-0.8
1,931,480	+		SO1842	0.19	+0.7
1,931,480	+		SO1842	0.19	+1.0
1,931,488	-		SO1842	0.20	+0.4
1,931,488	-		SO1842	0.20	-1.1
1,931,496	+		SO1842	0.21	+0.0
1,931,513	+		SO1842	0.23	-0.7
1,931,600	-		SO1842	0.35	-1.9
1,931,607	+		SO1842	0.36	-1.6
1,931,788	+		SO1842	0.61	-2.5
1,931,811	+		SO1842	0.64	-1.9
1,931,821	+		SO1842	0.65	-0.6
1,931,872	+		SO1842	0.72	-0.8
1,931,908	+				+0.0
1,931,908	+		SO1842	0.77	+0.0
1,931,908	+		SO1842	0.77	-1.2
1,931,916	-		SO1842	0.78	-2.6
1,931,916	-		SO1842	0.78	+0.0
1,931,916	-		SO1842	0.78	+0.2
1,931,980	+		SO1842	0.87	-1.5
1,931,981	+		SO1842	0.87	+0.9
1,931,981	+		SO1842	0.87	-0.9
1,931,981	+		SO1842	0.87	-2.2
1,931,981	+		SO1842	0.87	-0.4
1,931,981	+		SO1842	0.87	-0.8
1,931,981	+		SO1842	0.87	+0.3
1,932,213	+		SO1843	0.27	+0.8
1,932,244	+		SO1843	0.33	-1.2
1,932,296	-		SO1843	0.43	+0.4
1,932,298	+		SO1843	0.44	+1.4
1,932,518	+		SO1843	0.86	-3.0
1,932,629	-				-0.1
1,932,745	+				+2.4
1,932,899	-				-1.9
1,933,000	+				-0.3
1,933,036	-				-0.1