Strain Fitness in Shewanella oneidensis MR-1 around SO1771

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,849,931	-		SO1770	0.27	-0.8
1,849,931	-		SO1770	0.27	+1.6
1,849,955	+		SO1770	0.29	+2.6
1,850,082	-		SO1770	0.40	-0.8
1,850,085	+		SO1770	0.40	-1.2
1,850,093	-		SO1770	0.41	-1.1
1,850,101	-		SO1770	0.42	-1.6
1,850,151	-		SO1770	0.46	-0.8
1,850,173	-		SO1770	0.48	-1.0
1,850,361	-		SO1770	0.64	-0.6
1,850,396	+		SO1770	0.67	+1.5
1,850,415	+		SO1770	0.69	+0.5
1,850,438	+		SO1770	0.71	+0.0
1,850,464	+		SO1770	0.73	-1.0
1,850,464	+		SO1770	0.73	-1.0
1,850,464	+		SO1770	0.73	-2.1
1,850,472	-		SO1770	0.74	+1.2
1,850,472	-		SO1770	0.74	-0.7
1,850,472	-		SO1770	0.74	-1.8
1,850,472	-		SO1770	0.74	+0.4
1,850,581	-		SO1770	0.83	-0.1
1,850,689	+				+0.0
1,850,689	+				-1.7
1,850,689	+				-0.8
1,850,689	+				-2.2
1,850,696	-				-0.6
1,850,829	+				-3.1
1,850,829	+				-0.6
1,850,829	+				+1.4
1,850,837	-				-1.5
1,850,839	+				+0.7
1,850,839	+				-1.8
1,850,839	+				-0.7
1,850,846	+				-0.4
1,850,846	+				-1.0
1,850,847	-				-0.4
1,850,847	-				-0.0
1,850,847	-				-1.4
1,850,874	-				-0.7
1,850,880	+				+0.2
1,850,918	-				-1.0
1,850,928	-				-0.3
1,851,082	-		SO1771	0.18	+0.0
1,851,217	-		SO1771	0.28	+0.2
1,851,344	-		SO1771	0.38	+1.7
1,851,393	-		SO1771	0.41	+0.4
1,851,495	+		SO1771	0.49	+2.3
1,851,516	-		SO1771	0.50	+1.0
1,851,616	-		SO1771	0.58	-0.5
1,851,732	-		SO1771	0.66	-0.6
1,851,761	+		SO1771	0.68	-0.2
1,851,761	+		SO1771	0.68	+0.4
1,851,778	+		SO1771	0.70	+0.1
1,851,801	+		SO1771	0.71	+1.4
1,851,865	+		SO1771	0.76	-0.3
1,851,902	+		SO1771	0.79	+1.0
1,851,902	-		SO1771	0.79	+2.0
1,851,915	+		SO1771	0.80	+0.1
1,851,994	-		SO1771	0.86	+0.2
1,852,061	+				-0.6
1,852,061	+				+1.8
1,852,069	-				-1.2
1,852,184	+				-0.8
1,852,236	-				-0.3
1,852,237	+				-0.2
1,852,245	-				+0.3
1,852,245	-				+1.4
1,852,245	-				+0.0
1,852,258	-				-0.5
1,852,283	+				-0.7
1,852,283	+				+0.9
1,852,283	+				+1.1
1,852,290	+				+0.9
1,852,324	+				+1.8
1,852,568	+		SO_1773	0.37	-2.0
1,852,695	+				+1.2
1,852,731	+				-0.6
1,852,731	+				+0.5
1,852,810	+				-0.3
1,852,981	+		SO1771.2	0.29	-2.1