Strain Fitness in Shewanella oneidensis MR-1 around SO1667

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,753,618	+	phhA	SO1666	0.20	-1.0
1,753,626	-	phhA	SO1666	0.21	+0.5
1,753,643	+	phhA	SO1666	0.23	+0.5
1,753,719	+	phhA	SO1666	0.32	-0.8
1,753,721	-	phhA	SO1666	0.32	-0.3
1,753,932	-	phhA	SO1666	0.58	+0.4
1,753,958	+	phhA	SO1666	0.61	-1.2
1,753,984	+	phhA	SO1666	0.64	+2.1
1,753,992	-	phhA	SO1666	0.65	-0.4
1,753,993	-	phhA	SO1666	0.66	-1.4
1,754,105	+	phhA	SO1666	0.79	-0.4
1,754,111	+	phhA	SO1666	0.80	+2.9
1,754,113	-	phhA	SO1666	0.80	-0.7
1,754,113	-	phhA	SO1666	0.80	+0.2
1,754,201	-				-2.0
1,754,214	-				+0.2
1,754,216	-				-0.6
1,754,308	+				+0.0
1,754,317	+				+0.2
1,754,339	-				+0.2
1,754,362	-				+0.2
1,754,373	-				-1.0
1,754,388	-				+0.6
1,754,412	-		SO1667	0.16	-2.0
1,754,453	+		SO1667	0.28	-0.1
1,754,632	+		SO1667	0.81	-1.6
1,754,634	+		SO1667	0.81	-1.7
1,754,634	+		SO1667	0.81	-1.4
1,754,774	-				-1.9
1,754,779	-				-0.7
1,755,012	-				+1.4
1,755,168	+	tyrR	SO1669	0.14	+1.3
1,755,211	+	tyrR	SO1669	0.17	-1.6
1,755,297	-	tyrR	SO1669	0.22	+0.8
1,755,314	-	tyrR	SO1669	0.23	+1.0
1,755,376	+	tyrR	SO1669	0.27	+0.4
1,755,589	+	tyrR	SO1669	0.41	+2.0
1,755,669	+	tyrR	SO1669	0.46	-0.2