Strain Fitness in Shewanella oneidensis MR-1 around SO1610

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,693,269	-		SO1608	0.79	+1.0
1,693,315	+		SO1608	0.84	+0.1
1,693,357	+		SO1608	0.89	+1.7
1,693,368	+				+1.4
1,693,395	+				-1.5
1,693,419	+				-0.1
1,693,518	+				+0.4
1,693,560	+	syd	SO1609	0.12	-1.2
1,693,642	+	syd	SO1609	0.25	+0.6
1,693,686	+	syd	SO1609	0.31	-0.3
1,693,789	+	syd	SO1609	0.47	-1.4
1,693,789	+	syd	SO1609	0.47	+0.0
1,693,857	+	syd	SO1609	0.58	-0.2
1,693,963	+	syd	SO1609	0.74	-2.6
1,694,053	+	syd	SO1609	0.88	-0.9
1,694,058	+	syd	SO1609	0.89	-0.1
1,694,061	-	syd	SO1609	0.89	+0.1
1,694,128	-				+1.2
1,694,145	+				+0.7
1,694,207	-				-1.4
1,694,256	+				+1.2
1,694,337	-		SO1610	0.16	-2.1
1,694,343	-		SO1610	0.17	+0.2
1,694,435	+		SO1610	0.28	-1.1
1,694,461	+		SO1610	0.32	-0.2
1,694,556	-		SO1610	0.44	+0.2
1,694,587	-		SO1610	0.48	+1.0
1,694,602	+		SO1610	0.50	+0.1
1,694,603	+		SO1610	0.50	-0.6
1,694,611	-		SO1610	0.51	+2.0
1,694,611	-		SO1610	0.51	+0.2
1,694,611	-		SO1610	0.51	-1.8
1,694,628	+		SO1610	0.53	+2.8
1,694,638	+		SO1610	0.55	-0.5
1,694,638	+		SO1610	0.55	-0.8
1,694,638	+		SO1610	0.55	-1.5
1,694,684	+		SO1610	0.61	+1.2
1,694,824	+		SO1610	0.79	+0.1
1,694,875	+		SO1610	0.85	+2.1
1,694,875	+		SO1610	0.85	-0.2
1,694,883	-		SO1610	0.86	+2.7
1,694,883	-		SO1610	0.86	+0.7
1,694,926	+				+0.6
1,695,184	+		SO1611	0.51	-0.1
1,695,199	+		SO1611	0.55	-0.7
1,695,217	+		SO1611	0.60	+0.3
1,695,225	-		SO1611	0.62	-0.8
1,695,247	-		SO1611	0.67	-1.5
1,695,247	-		SO1611	0.67	-1.5
1,695,297	-		SO1611	0.80	-0.4
1,695,299	+		SO1611	0.81	-0.8
1,695,321	-		SO1611	0.87	-1.4
1,695,332	+		SO1611	0.90	-0.1
1,695,343	+				-0.7
1,695,413	+				+0.6
1,695,499	+				-1.1
1,695,576	+		SO1612	0.14	+0.9
1,695,583	-		SO1612	0.16	+0.7
1,695,584	-		SO1612	0.16	-0.1
1,695,684	+		SO1612	0.41	-0.6
1,695,684	+		SO1612	0.41	-0.1
1,695,684	+		SO1612	0.41	-0.8
1,695,684	+		SO1612	0.41	+0.2
1,695,690	+		SO1612	0.42	+0.4
1,695,732	+		SO1612	0.53	-1.6
1,695,732	+		SO1612	0.53	-0.6
1,695,745	-		SO1612	0.56	+1.9
1,695,765	+		SO1612	0.61	-0.6
1,695,799	+		SO1612	0.70	+0.6
1,695,892	+				+0.9
1,695,900	-				+1.0
1,695,902	+				+0.4
1,695,924	+				-0.3
1,695,924	+				-1.8