Strain Fitness in Shewanella oneidensis MR-1 around SO1572

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,650,277	+		SO1571	0.84	-0.9
1,650,366	+		SO1571	0.86	+0.1
1,650,404	+		SO1571	0.88	+0.3
1,650,412	-		SO1571	0.88	-0.9
1,650,431	+		SO1571	0.88	+0.1
1,650,431	+		SO1571	0.88	+0.2
1,650,489	+				-0.1
1,650,580	+				-0.0
1,650,580	+				+0.9
1,650,588	-				+1.7
1,650,588	-				-2.1
1,650,588	-				-0.4
1,650,598	-				+0.2
1,650,598	-				+1.5
1,650,719	+				-0.6
1,650,752	+				+0.7
1,650,752	+				-0.1
1,650,752	+				+0.7
1,650,752	+				+0.8
1,650,912	+				+1.1
1,650,949	+				-1.5
1,650,949	+				+0.7
1,650,949	+				-0.5
1,650,949	+				+0.9
1,650,949	+				-0.7
1,650,949	+				+0.4
1,650,957	-				+0.4
1,650,957	-				-0.4
1,650,957	-				+0.1
1,650,967	+				-0.1
1,651,148	+				+1.4
1,651,275	-		SO1572	0.28	-1.0
1,651,329	+		SO1572	0.61	-1.0
1,651,329	+		SO1572	0.61	-1.0
1,651,337	-		SO1572	0.65	-1.1
1,651,337	-		SO1572	0.65	-0.8
1,651,437	+				-1.0
1,651,527	+				+0.9
1,651,633	+				-1.2
1,651,978	-				-0.9
1,652,070	+				-1.0
1,652,071	-				-0.6
1,652,078	-				-0.3
1,652,260	-		SO1575	0.21	-0.5
1,652,299	+		SO1575	0.23	-0.8