Strain Fitness in Shewanella oneidensis MR-1 around SO1548

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,622,743	+				-1.5
1,622,888	+				-0.1
1,622,929	-				+1.8
1,622,984	-				+0.3
1,623,120	+				+0.1
1,623,146	-				+0.6
1,623,230	-				-0.4
1,623,304	+				+0.1
1,623,608	+		SO1548	0.60	-0.6
1,623,649	+		SO1548	0.70	-1.6
1,623,686	+		SO1548	0.79	-0.8
1,624,282	-	xni	SO1549	0.56	-1.2
1,624,312	+	xni	SO1549	0.60	+0.1
1,624,312	+	xni	SO1549	0.60	+0.0
1,624,432	+	xni	SO1549	0.77	-1.4
1,624,561	-				+0.6
1,624,578	-				+0.2
1,624,588	-				-0.5
1,624,612	-				-0.2
1,624,614	-				+0.3
1,624,727	-				+1.3
1,624,737	-				-0.3