Strain Fitness in Shewanella oneidensis MR-1 around SO1494

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,559,312	-	malQ	SO1493	0.59	+0.3
1,559,322	-	malQ	SO1493	0.59	+1.1
1,559,539	-	malQ	SO1493	0.69	-0.4
1,559,614	+	malQ	SO1493	0.72	+0.3
1,559,655	+	malQ	SO1493	0.74	-0.7
1,559,655	+	malQ	SO1493	0.74	+1.1
1,559,655	+	malQ	SO1493	0.74	-0.1
1,559,757	-	malQ	SO1493	0.78	+0.3
1,559,878	-	malQ	SO1493	0.84	+0.6
1,559,931	+	malQ	SO1493	0.86	-0.0
1,559,931	+	malQ	SO1493	0.86	-0.6
1,559,939	-	malQ	SO1493	0.86	-1.1
1,559,999	+	malQ	SO1493	0.89	-0.9
1,560,026	-	malQ	SO1493	0.90	+1.0
1,560,098	+				+0.5
1,560,173	-				-0.4
1,560,173	-				+0.1
1,560,248	-				+0.3
1,560,288	+				+0.2
1,560,321	+				-0.0
1,560,321	+				-0.6
1,560,321	+				-1.0
1,560,329	-				-0.6
1,560,352	-				+0.5
1,560,422	+				+1.3
1,560,437	+				-0.5
1,560,437	+				+0.2
1,560,445	-				-0.9
1,560,445	-				+0.1
1,560,464	+				-0.9
1,560,472	-				+0.7
1,560,608	-	glgB	SO1494	0.15	-0.6
1,560,633	+	glgB	SO1494	0.16	-1.3
1,560,633	+	glgB	SO1494	0.16	-0.8
1,560,698	-	glgB	SO1494	0.19	-1.7
1,560,725	+	glgB	SO1494	0.20	-0.3
1,560,788	+	glgB	SO1494	0.23	-1.6
1,560,834	+	glgB	SO1494	0.25	+0.2
1,560,857	-	glgB	SO1494	0.26	-1.7
1,560,928	+	glgB	SO1494	0.29	-1.8
1,561,009	+	glgB	SO1494	0.33	-0.0
1,561,055	-	glgB	SO1494	0.35	-0.2
1,561,055	-	glgB	SO1494	0.35	+1.5
1,561,670	+	glgB	SO1494	0.62	+1.6
1,561,718	+	glgB	SO1494	0.65	-1.3
1,561,718	+	glgB	SO1494	0.65	-0.4
1,561,726	-	glgB	SO1494	0.65	-0.5
1,561,726	-	glgB	SO1494	0.65	+0.8
1,561,726	-	glgB	SO1494	0.65	+1.2
1,561,726	-	glgB	SO1494	0.65	+0.6
1,561,726	-	glgB	SO1494	0.65	-0.5
1,561,747	+	glgB	SO1494	0.66	-1.5
1,561,826	+	glgB	SO1494	0.69	+0.9
1,561,834	-	glgB	SO1494	0.70	+0.2
1,561,842	+	glgB	SO1494	0.70	+0.5
1,561,850	-	glgB	SO1494	0.70	-0.9
1,561,874	-	glgB	SO1494	0.72	-1.4
1,561,882	-	glgB	SO1494	0.72	-3.0
1,561,888	+	glgB	SO1494	0.72	-0.8
1,562,015	+	glgB	SO1494	0.78	+0.4
1,562,082	+	glgB	SO1494	0.81	+0.7
1,562,100	-	glgB	SO1494	0.82	-0.0
1,562,164	-	glgB	SO1494	0.84	-1.2
1,562,172	-	glgB	SO1494	0.85	+0.1
1,562,302	+				-0.3
1,562,354	-				-0.9
1,562,401	+				-1.6
1,562,409	-				+0.7
1,562,409	-				-0.9
1,562,433	+				-0.8
1,562,457	-				+0.9
1,562,459	+				-2.4
1,562,565	+				-1.3
1,562,742	-	glgX	SO1495	0.10	-0.5
1,562,746	+	glgX	SO1495	0.11	-0.2
1,562,746	+	glgX	SO1495	0.11	+1.7
1,562,746	+	glgX	SO1495	0.11	-1.6
1,562,746	+	glgX	SO1495	0.11	+0.9
1,562,754	-	glgX	SO1495	0.11	-0.8
1,562,764	-	glgX	SO1495	0.11	+1.2
1,562,781	+	glgX	SO1495	0.12	-0.4
1,562,936	-	glgX	SO1495	0.19	-0.3
1,563,074	+	glgX	SO1495	0.25	+0.1
1,563,089	-	glgX	SO1495	0.26	-0.5
1,563,326	+	glgX	SO1495	0.36	-2.1
1,563,326	+	glgX	SO1495	0.36	+1.4