Strain Fitness in Shewanella oneidensis MR-1 around SO1407

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,461,525	+		SO1405	0.46	-0.5
1,461,655	+		SO1405	0.58	-0.9
1,461,655	+		SO1405	0.58	+0.5
1,461,665	-		SO1405	0.59	+0.4
1,461,684	-		SO1405	0.60	+1.2
1,461,701	-		SO1405	0.62	+0.3
1,461,704	+		SO1405	0.62	+0.4
1,461,976	+		SO1405	0.86	+0.8
1,461,984	-		SO1405	0.87	-1.0
1,462,008	-		SO1405	0.89	+0.3
1,462,013	+		SO1405	0.89	+1.6
1,462,013	+		SO1405	0.89	-0.1
1,462,018	+		SO1405	0.90	-0.9
1,462,018	+		SO1405	0.90	+2.0
1,462,047	+				-2.6
1,462,047	+				-1.4
1,462,055	-				-2.0
1,462,057	+				-0.0
1,462,128	+				-0.3
1,462,128	+				+0.2
1,462,136	-				+0.4
1,462,136	-				+2.2
1,462,241	+		SO1406	0.37	+1.3
1,462,266	+		SO1406	0.44	+1.0
1,462,266	+		SO1406	0.44	+0.7
1,462,281	+		SO1406	0.48	+0.9
1,462,360	+		SO1406	0.70	-0.7
1,462,400	-		SO1406	0.81	-0.7
1,462,449	+				-0.7
1,462,449	+				+0.2
1,462,457	-				-3.2
1,462,573	+		SO1407	0.35	-0.6
1,462,615	-		SO1407	0.49	-2.5
1,462,710	+		SO1407	0.79	-2.5
1,462,718	+		SO1407	0.82	+0.5
1,462,718	-		SO1407	0.82	+0.3
1,462,809	+				+1.4
1,462,868	+				-0.4
1,463,170	+		SO1408	0.12	-1.0
1,463,209	+		SO1408	0.13	-0.1
1,463,209	+		SO1408	0.13	+0.6
1,463,222	-		SO1408	0.14	-1.8
1,463,395	+		SO1408	0.20	+1.5
1,463,480	-		SO1408	0.23	-0.5
1,463,496	+		SO1408	0.23	-0.7
1,463,558	-		SO1408	0.25	+0.1
1,463,558	-		SO1408	0.25	-0.5
1,463,558	-		SO1408	0.25	+0.3
1,463,562	+		SO1408	0.25	-0.1
1,463,562	+		SO1408	0.25	-1.5
1,463,584	+		SO1408	0.26	-0.9
1,463,592	-		SO1408	0.26	-0.8
1,463,621	+		SO1408	0.27	+0.0
1,463,684	-		SO1408	0.29	-0.4
1,463,735	+		SO1408	0.31	-0.4