Strain Fitness in Shewanella oneidensis MR-1 around SO1379

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,435,254	+				+1.5
1,435,277	-				-1.9
1,435,292	+				+0.1
1,435,348	+				+0.6
1,435,348	+				+0.2
1,435,348	+				+0.6
1,435,348	+				+0.5
1,435,356	-				-3.1
1,435,356	-				+0.1
1,435,478	-				-1.6
1,435,481	-				+0.8
1,435,481	-				-0.7
1,435,540	-				+0.3
1,435,541	-				-0.7
1,435,680	-		SO1378	0.20	+0.1
1,436,079	-				-0.1
1,436,226	-				-0.2
1,436,406	+		SO1379	0.58	-1.0
1,436,414	-		SO1379	0.61	-1.6
1,436,574	+				-1.6
1,436,621	-				-1.1
1,436,634	-				+0.5
1,436,749	+				-1.2
1,436,749	+				+1.6
1,436,757	-				-0.3
1,436,757	-				-0.3
1,437,004	-		SO1380	0.41	-0.3
1,437,025	+		SO1380	0.44	-1.8
1,437,056	-		SO1380	0.48	+0.1
1,437,194	-		SO1380	0.66	+0.1
1,437,264	+				+0.3
1,437,345	+		SO1380	0.86	+0.5
1,437,353	-		SO1380	0.87	+0.3
1,437,371	-		SO1380	0.89	-0.9
1,437,513	+				+0.7
1,437,513	+				-0.3
1,437,521	-				-0.6