Strain Fitness in Shewanella oneidensis MR-1 around SO1222

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,267,346	-				+0.5
1,267,346	-				+0.5
1,267,346	-				+1.2
1,267,346	-				+2.3
1,267,412	+				+2.2
1,267,479	-	deoD-2	SO1221	0.11	-0.7
1,267,573	-	deoD-2	SO1221	0.25	+1.1
1,267,687	-	deoD-2	SO1221	0.41	+1.8
1,267,699	-	deoD-2	SO1221	0.42	+0.8
1,267,724	+	deoD-2	SO1221	0.46	+1.3
1,267,732	-	deoD-2	SO1221	0.47	+3.2
1,267,807	-	deoD-2	SO1221	0.58	-1.9
1,267,965	+	deoD-2	SO1221	0.80	-0.8
1,268,038	+				+0.1
1,268,105	+				+0.4
1,268,113	-				-2.0
1,268,116	+				+0.4
1,268,116	+				+1.5
1,268,116	+				+1.1
1,268,116	+				-0.6
1,268,116	+				+0.2
1,268,124	-				-0.2
1,268,124	-				+0.8
1,268,124	-				-0.6
1,268,124	-				+0.3
1,268,124	-				+1.7
1,268,124	-				+1.3
1,268,124	-				-0.0
1,268,124	-				-0.7
1,268,124	-				+0.0
1,268,124	-				-1.4
1,268,124	-				-1.1
1,268,124	-				+1.0
1,268,351	-				+0.2
1,268,454	+		SO1222	0.15	-0.9
1,268,467	-		SO1222	0.16	-0.3
1,268,501	+		SO1222	0.18	-1.0
1,268,503	+		SO1222	0.19	-0.9
1,268,509	-		SO1222	0.19	-2.3
1,268,600	-		SO1222	0.26	-0.6
1,268,605	+		SO1222	0.27	-1.5
1,268,701	-		SO1222	0.35	-1.0
1,268,812	+		SO1222	0.44	-1.1
1,268,835	+		SO1222	0.46	+0.0
1,268,843	-		SO1222	0.46	+0.1
1,268,998	-		SO1222	0.59	+2.8
1,269,133	+		SO1222	0.70	+1.1
1,269,176	+		SO1222	0.74	-1.6
1,269,773	+	serB	SO_1223	0.20	-0.5
1,269,818	-	serB	SO_1223	0.24	+0.2
1,269,833	+	serB	SO_1223	0.26	+1.6
1,269,838	+	serB	SO_1223	0.26	-1.9
1,269,903	+	serB	SO_1223	0.33	-2.5
1,270,109	+	serB	SO_1223	0.53	+2.6
1,270,109	+	serB	SO_1223	0.53	-1.5
1,270,117	-	serB	SO_1223	0.54	-0.6
1,270,117	-	serB	SO_1223	0.54	-0.8
1,270,125	-	serB	SO_1223	0.55	-2.4
1,270,142	-	serB	SO_1223	0.57	+0.1
1,270,193	+	serB	SO_1223	0.62	+1.8
1,270,193	+	serB	SO_1223	0.62	-0.6
1,270,193	+	serB	SO_1223	0.62	+0.6
1,270,201	-	serB	SO_1223	0.63	-0.2
1,270,234	+	serB	SO_1223	0.66	+2.7
1,270,335	-	serB	SO_1223	0.76	-0.3
1,270,358	+	serB	SO_1223	0.78	-1.0
1,270,358	+	serB	SO_1223	0.78	-1.8
1,270,358	+	serB	SO_1223	0.78	-1.1
1,270,358	+	serB	SO_1223	0.78	-0.5
1,270,366	-	serB	SO_1223	0.79	+0.2
1,270,440	+	serB	SO_1223	0.87	-1.3