Strain Fitness in Shewanella oneidensis MR-1 around SO1181

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,222,885	-		SO1180	0.32	+0.3
1,222,940	-		SO1180	0.37	-0.2
1,223,005	-		SO1180	0.43	-0.4
1,223,039	-		SO1180	0.46	-0.1
1,223,050	-		SO1180	0.47	-0.8
1,223,199	-		SO1180	0.61	+1.8
1,223,199	-		SO1180	0.61	-0.6
1,223,220	-		SO1180	0.63	-0.2
1,223,232	-		SO1180	0.64	-0.6
1,223,412	-		SO1180	0.81	+1.3
1,223,434	-		SO1180	0.83	-0.2
1,223,566	-				-1.2
1,223,869	+				+0.6
1,223,884	+				-1.5
1,223,906	+				-0.3
1,223,944	-				-0.4
1,223,966	-				-2.4
1,224,010	+				-1.7
1,224,043	-	miaB	SO1181	0.11	-0.3
1,224,152	+	miaB	SO1181	0.19	-0.4
1,224,155	-	miaB	SO1181	0.19	-0.9
1,224,399	+	miaB	SO1181	0.36	+1.3
1,224,426	-	miaB	SO1181	0.38	-1.1
1,224,469	+	miaB	SO1181	0.41	-0.7
1,224,496	+	miaB	SO1181	0.43	-0.6
1,224,499	-	miaB	SO1181	0.43	-0.4
1,224,559	+				-0.2
1,224,662	-	miaB	SO1181	0.55	-0.9
1,224,706	-	miaB	SO1181	0.58	+1.3
1,224,728	+	miaB	SO1181	0.60	-0.2
1,224,780	+	miaB	SO1181	0.63	-1.4
1,224,786	-	miaB	SO1181	0.64	+0.4
1,224,881	+	miaB	SO1181	0.70	-2.6
1,225,077	-	miaB	SO1181	0.84	-1.3
1,225,206	+				-2.0
1,225,214	-				-0.2
1,225,214	-				-1.5
1,225,315	+				+0.5
1,225,315	+				-1.4
1,225,315	+				-0.9
1,225,315	+				-1.0
1,225,323	-				-0.5
1,225,323	-				-1.2
1,225,349	+				+1.3
1,225,350	+				-3.5
1,225,382	-				-1.7
1,225,643	-		SO1182	0.62	+1.7
1,225,651	-		SO1182	0.64	+0.8
1,225,671	+		SO1182	0.71	+0.5
1,225,775	-				+0.8
1,225,815	-				-0.9
1,225,884	+				+0.5
1,225,884	+				-0.7
1,225,892	-				+2.8
1,225,892	-				+0.0
1,225,897	-				+0.8
1,225,934	+				+2.5
1,226,036	-				+1.8