Strain Fitness in Shewanella oneidensis MR-1 around SO1141

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,180,761	+				+1.6
1,180,761	+				+0.8
1,181,579	+				+0.1
1,182,088	+	carA	SO1141	0.28	-2.5
1,182,287	-	carA	SO1141	0.46	+0.0
1,182,287	-	carA	SO1141	0.46	+0.2
1,182,407	+	carA	SO1141	0.56	-1.0
1,182,407	+	carA	SO1141	0.56	-0.8
1,182,647	-	carA	SO1141	0.77	-1.8
1,182,652	-	carA	SO1141	0.77	-3.4
1,182,740	+	carA	SO1141	0.85	-2.5
1,182,785	+	carA	SO1141	0.88	-0.8
1,182,785	+	carA	SO1141	0.88	-0.2
1,182,793	-	carA	SO1141	0.89	-1.6
1,182,844	+				-1.6
1,182,861	+				-0.4
1,182,954	-				-0.5
1,183,006	+				-3.8
1,183,036	+				-1.8
1,183,097	-				+0.0
1,183,097	-				+2.8
1,183,097	-				+0.5
1,183,097	-				+0.8
1,183,228	+				-2.5
1,183,236	-				-0.8
1,183,336	+	carB	SO1142	0.12	-2.4
1,183,348	+	carB	SO1142	0.12	-0.5
1,183,371	-	carB	SO1142	0.13	-1.4
1,183,402	+	carB	SO1142	0.14	+1.2
1,183,769	-	carB	SO1142	0.26	-0.6
1,183,855	-	carB	SO1142	0.28	+0.2
1,183,855	-	carB	SO1142	0.28	-1.8