Strain Fitness in Shewanella oneidensis MR-1 around SO1063

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,101,907	+		SO1061	0.74	-2.6
1,101,940	+		SO1061	0.77	-1.2
1,102,103	+		SO1061	0.88	+0.6
1,102,108	+		SO1061	0.89	-0.6
1,102,117	-		SO1061	0.89	-1.1
1,102,152	-				-1.3
1,102,497	-	def-2	SO1062	0.43	-1.8
1,102,505	-	def-2	SO1062	0.44	-1.6
1,102,580	+	def-2	SO1062	0.58	-1.2
1,102,887	+				-1.0
1,102,889	+	slyX	SO1063	0.11	-0.4
1,103,009	-	slyX	SO1063	0.67	-2.1
1,103,073	+				-0.4
1,103,085	+				+2.8
1,103,085	+				-0.6
1,103,190	+		SO1064	0.11	-0.4
1,103,199	-		SO1064	0.12	+1.6
1,103,263	-		SO1064	0.18	-1.4
1,103,411	+		SO1064	0.34	+0.9
1,103,433	-		SO1064	0.36	-1.8
1,103,435	+		SO1064	0.36	+0.5
1,103,437	+		SO1064	0.37	-0.1
1,103,443	-		SO1064	0.37	-0.2
1,103,443	-		SO1064	0.37	-0.5
1,103,499	+		SO1064	0.43	+0.2
1,103,529	+		SO1064	0.46	-1.5
1,103,529	+		SO1064	0.46	-1.0
1,103,549	-		SO1064	0.48	-0.4
1,103,627	+		SO1064	0.57	-0.1
1,103,627	+		SO1064	0.57	-1.2
1,103,650	-		SO1064	0.59	-0.3
1,103,662	+		SO1064	0.60	+1.6
1,103,709	+		SO1064	0.65	-0.4
1,103,748	-		SO1064	0.69	-1.4
1,103,818	+		SO1064	0.77	+0.7
1,103,818	+		SO1064	0.77	+0.6
1,103,818	+		SO1064	0.77	-0.5
1,103,818	+		SO1064	0.77	-0.6
1,103,826	-		SO1064	0.78	+2.5
1,103,868	+		SO1064	0.82	-0.6
1,103,884	+		SO1064	0.84	-2.1
1,103,884	+		SO1064	0.84	-0.0
1,103,884	+		SO1064	0.84	+0.6
1,103,884	+		SO1064	0.84	-2.2
1,103,884	+		SO1064	0.84	-0.2
1,103,884	+		SO1064	0.84	-1.5
1,103,884	+		SO1064	0.84	+1.6
1,103,884	+		SO1064	0.84	-1.7
1,103,884	+		SO1064	0.84	+1.4
1,103,892	-		SO1064	0.85	-0.7
1,103,892	-		SO1064	0.85	+0.6
1,103,892	-		SO1064	0.85	-1.0
1,103,892	-		SO1064	0.85	-1.4
1,103,892	-		SO1064	0.85	+0.5
1,103,892	-		SO1064	0.85	+0.8
1,103,902	-		SO1064	0.86	-0.8
1,103,931	-		SO1064	0.89	-0.6
1,103,977	+				-0.0
1,103,985	-				-0.8