Strain Fitness in Shewanella oneidensis MR-1 around SO1060

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,099,316	+		SO1059	0.75	-3.0
1,099,316	+		SO1059	0.75	-2.1
1,099,482	-		SO1059	0.82	+1.4
1,099,511	+		SO1059	0.83	-1.6
1,099,511	+		SO1059	0.83	-1.0
1,099,590	+		SO1059	0.86	+0.5
1,099,590	-		SO1059	0.86	-1.4
1,099,644	-		SO1059	0.88	-0.1
1,099,907	+				-1.3
1,099,923	-				-1.6
1,099,930	+				-1.0
1,099,930	+				-0.3
1,099,930	+				-0.8
1,099,938	-				-1.0
1,099,938	-				-0.6
1,100,011	+				-1.9
1,100,011	+				-2.2
1,100,011	+				-0.8
1,100,011	+				-0.5
1,100,011	+				-0.4
1,100,011	+				-0.8
1,100,011	+				-1.5
1,100,019	-				-0.3
1,100,019	-				-1.4
1,100,019	-				+1.2
1,100,019	-				+1.0
1,100,019	-				-0.9
1,100,019	-				+0.5
1,100,024	+				-1.0
1,100,032	-				+0.9
1,100,078	-				-1.6
1,100,110	-				+1.1
1,100,907	+				-0.9
1,100,912	+				-2.5
1,100,912	+				-2.4
1,100,920	-				-0.5
1,100,925	-				-0.8
1,100,925	-				-3.1
1,100,925	-				-0.4
1,100,926	+				-1.1
1,100,935	-				-0.2
1,100,958	+				-0.5
1,100,971	-				-1.4
1,101,031	-		SO1061	0.12	-1.2
1,101,271	+		SO1061	0.29	-2.3
1,101,455	+		SO1061	0.42	-1.8
1,101,542	+		SO1061	0.48	-0.2
1,101,600	-		SO1061	0.52	-0.6
1,101,696	+		SO1061	0.59	-1.4
1,101,723	-		SO1061	0.61	-1.9
1,101,753	+		SO1061	0.63	-0.2
1,101,758	+		SO1061	0.64	+1.6