Strain Fitness in Shewanella oneidensis MR-1 around SO1045

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
1,082,657	-		SO1044	0.58	+0.1
1,082,667	+		SO1044	0.59	-1.0
1,082,700	+		SO1044	0.64	+1.1
1,082,724	-		SO1044	0.67	-1.2
1,082,854	+		SO1044	0.84	+0.3
1,082,901	+				-1.1
1,082,934	+				+2.1
1,082,934	+				-0.1
1,082,942	-				+0.6
1,082,942	-				-0.1
1,082,942	-				-1.6
1,082,942	-				+0.0
1,082,942	-				-1.7
1,083,371	+				+0.6
1,083,419	+		SO1045	0.11	-0.5
1,083,427	-		SO1045	0.12	-1.0
1,083,472	+		SO1045	0.17	-1.1
1,083,472	+		SO1045	0.17	-0.3
1,083,472	+		SO1045	0.17	-2.6
1,083,480	-		SO1045	0.18	-0.4
1,083,480	-		SO1045	0.18	-0.4
1,083,480	-		SO1045	0.18	+0.0
1,083,480	-		SO1045	0.18	+0.5
1,083,480	-		SO1045	0.18	+0.1
1,083,480	-		SO1045	0.18	-0.0
1,083,493	-		SO1045	0.20	+0.3
1,083,596	-		SO1045	0.32	-0.6
1,083,626	-		SO1045	0.36	-1.5
1,083,648	+		SO1045	0.38	-0.5
1,083,656	-		SO1045	0.39	+0.2
1,083,686	+		SO1045	0.43	-2.4
1,083,686	+		SO1045	0.43	+0.2
1,083,686	+		SO1045	0.43	+0.6
1,083,686	+		SO1045	0.43	+0.3
1,083,686	+		SO1045	0.43	+1.0
1,083,686	+		SO1045	0.43	-0.8
1,083,686	+		SO1045	0.43	-0.0
1,083,694	-		SO1045	0.44	+0.2
1,083,694	-		SO1045	0.44	-0.2
1,083,694	-		SO1045	0.44	+1.5
1,083,749	-		SO1045	0.50	-0.5
1,083,773	+		SO1045	0.53	+0.5
1,083,773	+		SO1045	0.53	+0.2
1,083,781	-		SO1045	0.54	+1.9
1,083,781	-		SO1045	0.54	-0.6
1,083,789	+		SO1045	0.55	+0.8
1,083,791	-		SO1045	0.55	+0.7
1,083,839	+		SO1045	0.61	+0.0
1,083,879	+		SO1045	0.66	+0.4
1,084,114	-				-1.1
1,084,128	+				-1.1
1,084,229	-				-1.3
1,084,229	-				-1.7
1,084,268	+		SO1046	0.11	+0.2
1,084,309	+		SO1046	0.16	-1.4
1,084,309	+		SO1046	0.16	-1.4
1,084,309	+		SO1046	0.16	+0.4
1,084,317	-		SO1046	0.17	-0.3
1,084,317	-		SO1046	0.17	+0.1
1,084,330	-		SO1046	0.18	+0.2
1,084,346	+		SO1046	0.20	-0.2
1,084,507	+		SO1046	0.38	-0.1
1,084,553	-		SO1046	0.43	+2.8
1,084,559	+		SO1046	0.44	-0.2
1,084,559	+		SO1046	0.44	+0.2
1,084,567	-		SO1046	0.45	+4.8
1,084,663	+		SO1046	0.56	-0.6
1,084,749	+		SO1046	0.65	+0.6
1,084,749	+		SO1046	0.65	-1.0
1,084,749	+		SO1046	0.65	+0.9
1,084,757	+		SO1046	0.66	+0.5
1,084,757	-		SO1046	0.66	-0.3
1,084,765	-		SO1046	0.67	-0.5
1,084,765	-		SO1046	0.67	-0.6
1,084,769	+		SO1046	0.68	-0.3
1,084,769	+		SO1046	0.68	-1.0
1,084,792	-		SO1046	0.70	-1.2
1,084,842	-		SO1046	0.76	-1.6
1,084,873	+		SO1046	0.79	-0.9
1,084,873	+		SO1046	0.79	+0.4
1,084,927	-		SO1046	0.85	+0.2
1,084,954	+		SO1046	0.88	+0.2
1,084,954	+		SO1046	0.88	+0.8
1,084,954	+		SO1046	0.88	+0.0
1,084,954	+		SO1046	0.88	-0.9
1,084,954	+		SO1046	0.88	+0.2
1,084,954	+		SO1046	0.88	-0.5
1,084,954	+		SO1046	0.88	-0.4
1,084,962	-		SO1046	0.89	-1.6
1,084,962	-		SO1046	0.89	-1.9
1,084,969	+				-0.2
1,084,995	+				-2.5