Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0939 and SO0940 are separated by 441 nucleotides SO0940 and SO0941 overlap by 8 nucleotides SO0941 and SO0942 are separated by 84 nucleotides
SO0939: SO0939 - cytochrome c, putative (NCBI ptt file), at 969,959 to 970,783
SO0939
SO0940: SO0940 - transcriptional regulator-related protein (NCBI ptt file), at 971,225 to 971,968
SO0940
SO0941: SO0941 - hypothetical protein (NCBI ptt file), at 971,961 to 972,491
SO0941
SO0942: SO0942 - conserved hypothetical protein (NCBI ptt file), at 972,576 to 973,976
SO0942
Position (kb) 971
972 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 970.268 kb on + strand, within SO0939 at 970.331 kb on + strand, within SO0939 at 970.429 kb on + strand, within SO0939 at 970.436 kb on - strand, within SO0939 at 970.436 kb on - strand, within SO0939 at 970.483 kb on - strand, within SO0939 at 970.500 kb on - strand, within SO0939 at 970.557 kb on + strand, within SO0939 at 970.580 kb on + strand, within SO0939 at 970.634 kb on - strand, within SO0939 at 970.685 kb on - strand, within SO0939 at 970.687 kb on + strand, within SO0939 at 970.751 kb on + strand at 970.751 kb on + strand at 970.759 kb on - strand at 970.768 kb on + strand at 970.983 kb on - strand at 970.983 kb on - strand at 971.105 kb on + strand at 971.105 kb on + strand at 971.114 kb on - strand at 971.141 kb on + strand at 971.184 kb on - strand at 971.312 kb on + strand, within SO0940 at 971.312 kb on + strand, within SO0940 at 971.320 kb on - strand, within SO0940 at 971.371 kb on + strand, within SO0940 at 971.421 kb on + strand, within SO0940 at 971.543 kb on - strand, within SO0940 at 971.557 kb on + strand, within SO0940 at 971.557 kb on + strand, within SO0940 at 971.576 kb on - strand, within SO0940 at 971.682 kb on + strand, within SO0940 at 971.700 kb on - strand, within SO0940 at 971.728 kb on + strand, within SO0940 at 971.760 kb on + strand, within SO0940 at 971.760 kb on + strand, within SO0940 at 971.768 kb on - strand, within SO0940 at 971.768 kb on - strand, within SO0940 at 971.772 kb on + strand, within SO0940 at 971.772 kb on + strand, within SO0940 at 971.779 kb on - strand, within SO0940 at 971.780 kb on - strand, within SO0940 at 971.940 kb on + strand at 971.942 kb on + strand at 971.951 kb on + strand at 972.176 kb on - strand, within SO0941 at 972.266 kb on - strand, within SO0941 at 972.324 kb on - strand, within SO0941 at 972.365 kb on - strand, within SO0941 at 972.388 kb on + strand, within SO0941 at 972.419 kb on + strand, within SO0941 at 972.424 kb on + strand, within SO0941 at 972.427 kb on - strand, within SO0941 at 972.706 kb on + strand at 972.730 kb on - strand, within SO0942 at 972.768 kb on + strand, within SO0942 at 972.768 kb on + strand, within SO0942 at 972.829 kb on + strand, within SO0942 at 972.829 kb on + strand, within SO0942 at 972.931 kb on - strand, within SO0942
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 970,268 + SO0939 0.37 -0.6 970,331 + SO0939 0.45 +0.3 970,429 + SO0939 0.57 +1.2 970,436 - SO0939 0.58 -0.9 970,436 - SO0939 0.58 +0.3 970,483 - SO0939 0.64 +0.6 970,500 - SO0939 0.66 +0.6 970,557 + SO0939 0.72 -0.2 970,580 + SO0939 0.75 -0.4 970,634 - SO0939 0.82 +0.3 970,685 - SO0939 0.88 +0.0 970,687 + SO0939 0.88 +0.4 970,751 + -1.7 970,751 + -0.6 970,759 - -0.4 970,768 + -0.6 970,983 - -0.6 970,983 - -0.1 971,105 + -1.6 971,105 + -1.1 971,114 - +1.4 971,141 + -0.7 971,184 - -0.5 971,312 + SO0940 0.12 +1.5 971,312 + SO0940 0.12 -0.2 971,320 - SO0940 0.13 -0.3 971,371 + SO0940 0.20 -1.6 971,421 + SO0940 0.26 +0.1 971,543 - SO0940 0.43 -1.6 971,557 + SO0940 0.45 +0.5 971,557 + SO0940 0.45 -1.5 971,576 - SO0940 0.47 +0.2 971,682 + SO0940 0.61 +0.3 971,700 - SO0940 0.64 -0.4 971,728 + SO0940 0.68 -1.0 971,760 + SO0940 0.72 +0.7 971,760 + SO0940 0.72 -0.8 971,768 - SO0940 0.73 +0.6 971,768 - SO0940 0.73 -1.0 971,772 + SO0940 0.74 -1.5 971,772 + SO0940 0.74 -1.4 971,779 - SO0940 0.74 +0.6 971,780 - SO0940 0.75 +0.7 971,940 + -2.0 971,942 + +0.9 971,951 + +1.7 972,176 - SO0941 0.40 -2.0 972,266 - SO0941 0.57 +1.1 972,324 - SO0941 0.68 -2.5 972,365 - SO0941 0.76 -2.4 972,388 + SO0941 0.80 +1.5 972,419 + SO0941 0.86 -0.0 972,424 + SO0941 0.87 +0.7 972,427 - SO0941 0.88 +0.4 972,706 + -3.1 972,730 - SO0942 0.11 -1.2 972,768 + SO0942 0.14 -1.5 972,768 + SO0942 0.14 -1.8 972,829 + SO0942 0.18 -0.7 972,829 + SO0942 0.18 +2.5 972,931 - SO0942 0.25 -0.7
Or see this region's nucleotide sequence