Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nqrA-1 and nqrB-1 overlap by 1 nucleotides nqrB-1 and nqrC-1 overlap by 11 nucleotides nqrC-1 and nqrD-1 overlap by 4 nucleotides
SO0902: nqrA-1 - NADH:ubiquinone oxidoreductase, Na translocating, alpha subunit (NCBI ptt file), at 928,930 to 930,300
nqrA-1
SO0903: nqrB-1 - NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrB (NCBI ptt file), at 930,300 to 931,532
nqrB-1
SO0904: nqrC-1 - NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit (NCBI ptt file), at 931,522 to 932,316
nqrC-1
SO0905: nqrD-1 - NADH:ubiquinone oxidoreductase, Na translocating, hydrophobic membrane protein NqrD (NCBI ptt file), at 932,313 to 932,933
nqrD-1
Position (kb) 930
931
932 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 929.318 kb on - strand, within nqrA-1 at 929.324 kb on + strand, within nqrA-1 at 929.331 kb on + strand, within nqrA-1 at 929.336 kb on + strand, within nqrA-1 at 929.339 kb on - strand, within nqrA-1 at 929.339 kb on - strand, within nqrA-1 at 929.458 kb on + strand, within nqrA-1 at 929.466 kb on - strand, within nqrA-1 at 929.545 kb on + strand, within nqrA-1 at 929.553 kb on - strand, within nqrA-1 at 929.553 kb on - strand, within nqrA-1 at 929.570 kb on + strand, within nqrA-1 at 929.603 kb on - strand, within nqrA-1 at 929.616 kb on - strand, within nqrA-1 at 929.616 kb on - strand, within nqrA-1 at 929.616 kb on - strand, within nqrA-1 at 929.649 kb on - strand, within nqrA-1 at 929.649 kb on - strand, within nqrA-1 at 929.706 kb on + strand, within nqrA-1 at 929.714 kb on - strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.721 kb on + strand, within nqrA-1 at 929.753 kb on + strand, within nqrA-1 at 929.761 kb on - strand, within nqrA-1 at 929.761 kb on - strand, within nqrA-1 at 929.762 kb on + strand, within nqrA-1 at 929.770 kb on - strand, within nqrA-1 at 929.803 kb on - strand, within nqrA-1 at 929.851 kb on + strand, within nqrA-1 at 929.859 kb on - strand, within nqrA-1 at 929.861 kb on + strand, within nqrA-1 at 929.952 kb on - strand, within nqrA-1 at 930.030 kb on + strand, within nqrA-1 at 930.055 kb on + strand, within nqrA-1 at 930.063 kb on - strand, within nqrA-1 at 930.063 kb on - strand, within nqrA-1 at 930.073 kb on - strand, within nqrA-1 at 930.135 kb on + strand, within nqrA-1 at 930.146 kb on + strand, within nqrA-1 at 930.232 kb on - strand at 930.259 kb on + strand at 930.272 kb on + strand at 930.280 kb on + strand at 930.280 kb on - strand at 930.280 kb on - strand at 930.280 kb on - strand at 930.280 kb on - strand at 930.303 kb on - strand at 930.405 kb on - strand at 930.558 kb on + strand, within nqrB-1 at 930.568 kb on + strand, within nqrB-1 at 930.591 kb on - strand, within nqrB-1 at 930.593 kb on + strand, within nqrB-1 at 930.601 kb on - strand, within nqrB-1 at 930.601 kb on - strand, within nqrB-1 at 930.601 kb on - strand, within nqrB-1 at 930.601 kb on - strand, within nqrB-1 at 930.629 kb on - strand, within nqrB-1 at 930.793 kb on - strand, within nqrB-1 at 930.793 kb on - strand, within nqrB-1 at 930.863 kb on - strand, within nqrB-1 at 930.881 kb on + strand, within nqrB-1 at 930.881 kb on - strand, within nqrB-1 at 930.881 kb on - strand, within nqrB-1 at 931.084 kb on + strand, within nqrB-1 at 931.086 kb on - strand, within nqrB-1 at 931.112 kb on - strand, within nqrB-1 at 931.175 kb on - strand, within nqrB-1 at 931.180 kb on - strand, within nqrB-1 at 931.428 kb on + strand at 931.457 kb on + strand at 931.465 kb on - strand at 931.565 kb on + strand at 931.589 kb on + strand at 931.589 kb on + strand at 931.589 kb on + strand at 931.597 kb on - strand at 931.597 kb on - strand at 931.624 kb on - strand, within nqrC-1 at 931.770 kb on - strand, within nqrC-1 at 931.801 kb on - strand, within nqrC-1 at 931.811 kb on - strand, within nqrC-1 at 931.838 kb on + strand, within nqrC-1 at 931.838 kb on - strand, within nqrC-1 at 931.889 kb on + strand, within nqrC-1 at 931.890 kb on + strand, within nqrC-1 at 931.899 kb on - strand, within nqrC-1 at 932.045 kb on - strand, within nqrC-1 at 932.075 kb on + strand, within nqrC-1 at 932.136 kb on + strand, within nqrC-1 at 932.298 kb on + strand at 932.306 kb on - strand at 932.385 kb on + strand, within nqrD-1 at 932.414 kb on + strand, within nqrD-1 at 932.427 kb on - strand, within nqrD-1 at 932.446 kb on + strand, within nqrD-1 at 932.510 kb on + strand, within nqrD-1 at 932.510 kb on + strand, within nqrD-1
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 929,318 - nqrA-1 SO0902 0.28 -0.4 929,324 + nqrA-1 SO0902 0.29 -0.1 929,331 + nqrA-1 SO0902 0.29 +0.7 929,336 + nqrA-1 SO0902 0.30 +0.0 929,339 - nqrA-1 SO0902 0.30 -2.3 929,339 - nqrA-1 SO0902 0.30 -0.9 929,458 + nqrA-1 SO0902 0.39 -1.2 929,466 - nqrA-1 SO0902 0.39 -1.0 929,545 + nqrA-1 SO0902 0.45 +0.2 929,553 - nqrA-1 SO0902 0.45 -2.2 929,553 - nqrA-1 SO0902 0.45 +1.0 929,570 + nqrA-1 SO0902 0.47 -0.5 929,603 - nqrA-1 SO0902 0.49 +0.5 929,616 - nqrA-1 SO0902 0.50 +0.5 929,616 - nqrA-1 SO0902 0.50 +0.5 929,616 - nqrA-1 SO0902 0.50 -0.5 929,649 - nqrA-1 SO0902 0.52 +0.9 929,649 - nqrA-1 SO0902 0.52 -2.3 929,706 + nqrA-1 SO0902 0.57 +3.1 929,714 - nqrA-1 SO0902 0.57 -1.0 929,721 + nqrA-1 SO0902 0.58 -1.8 929,721 + nqrA-1 SO0902 0.58 -1.3 929,721 + nqrA-1 SO0902 0.58 -0.6 929,721 + nqrA-1 SO0902 0.58 -1.7 929,721 + nqrA-1 SO0902 0.58 -1.1 929,721 + nqrA-1 SO0902 0.58 -0.2 929,753 + nqrA-1 SO0902 0.60 -1.5 929,761 - nqrA-1 SO0902 0.61 -0.1 929,761 - nqrA-1 SO0902 0.61 -0.6 929,762 + nqrA-1 SO0902 0.61 -0.0 929,770 - nqrA-1 SO0902 0.61 +2.5 929,803 - nqrA-1 SO0902 0.64 -0.5 929,851 + nqrA-1 SO0902 0.67 -2.7 929,859 - nqrA-1 SO0902 0.68 -1.6 929,861 + nqrA-1 SO0902 0.68 -1.5 929,952 - nqrA-1 SO0902 0.75 -1.8 930,030 + nqrA-1 SO0902 0.80 -0.0 930,055 + nqrA-1 SO0902 0.82 -0.7 930,063 - nqrA-1 SO0902 0.83 -0.7 930,063 - nqrA-1 SO0902 0.83 +1.1 930,073 - nqrA-1 SO0902 0.83 +0.1 930,135 + nqrA-1 SO0902 0.88 -1.0 930,146 + nqrA-1 SO0902 0.89 +2.0 930,232 - -0.1 930,259 + +1.2 930,272 + -0.5 930,280 + +0.1 930,280 - +1.0 930,280 - -0.1 930,280 - -0.3 930,280 - -1.6 930,303 - -1.3 930,405 - +2.1 930,558 + nqrB-1 SO0903 0.21 -1.2 930,568 + nqrB-1 SO0903 0.22 +0.3 930,591 - nqrB-1 SO0903 0.24 -0.8 930,593 + nqrB-1 SO0903 0.24 -0.8 930,601 - nqrB-1 SO0903 0.24 -1.6 930,601 - nqrB-1 SO0903 0.24 -2.0 930,601 - nqrB-1 SO0903 0.24 +0.5 930,601 - nqrB-1 SO0903 0.24 -0.1 930,629 - nqrB-1 SO0903 0.27 -1.5 930,793 - nqrB-1 SO0903 0.40 -1.2 930,793 - nqrB-1 SO0903 0.40 -1.2 930,863 - nqrB-1 SO0903 0.46 +0.8 930,881 + nqrB-1 SO0903 0.47 -1.4 930,881 - nqrB-1 SO0903 0.47 -1.6 930,881 - nqrB-1 SO0903 0.47 -1.5 931,084 + nqrB-1 SO0903 0.64 -0.5 931,086 - nqrB-1 SO0903 0.64 -0.9 931,112 - nqrB-1 SO0903 0.66 -1.1 931,175 - nqrB-1 SO0903 0.71 -0.3 931,180 - nqrB-1 SO0903 0.71 +0.1 931,428 + -2.3 931,457 + +1.0 931,465 - -0.1 931,565 + +0.4 931,589 + -0.6 931,589 + -0.3 931,589 + -3.0 931,597 - +0.3 931,597 - -1.0 931,624 - nqrC-1 SO0904 0.13 +0.2 931,770 - nqrC-1 SO0904 0.31 -0.3 931,801 - nqrC-1 SO0904 0.35 +0.3 931,811 - nqrC-1 SO0904 0.36 -0.2 931,838 + nqrC-1 SO0904 0.40 +0.6 931,838 - nqrC-1 SO0904 0.40 -1.3 931,889 + nqrC-1 SO0904 0.46 -0.3 931,890 + nqrC-1 SO0904 0.46 +0.2 931,899 - nqrC-1 SO0904 0.47 +2.7 932,045 - nqrC-1 SO0904 0.66 -0.5 932,075 + nqrC-1 SO0904 0.70 -0.5 932,136 + nqrC-1 SO0904 0.77 +0.6 932,298 + -3.4 932,306 - +2.5 932,385 + nqrD-1 SO0905 0.12 +1.2 932,414 + nqrD-1 SO0905 0.16 -1.3 932,427 - nqrD-1 SO0905 0.18 +0.5 932,446 + nqrD-1 SO0905 0.21 +0.4 932,510 + nqrD-1 SO0905 0.32 -1.8 932,510 + nqrD-1 SO0905 0.32 -0.5
Or see this region's nucleotide sequence