Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mrcB and ppiC-1 are separated by 77 nucleotides ppiC-1 and SO0636 are separated by 97 nucleotides SO0636 and SO0637 overlap by 4 nucleotides SO0637 and SO0638 are separated by 27 nucleotides SO0638 and SO0639 are separated by 188 nucleotides
SO0633: mrcB - penicillin-binding protein 1B (NCBI ptt file), at 660,661 to 662,967
mrcB
SO0635: ppiC-1 - peptidyl-prolyl cis-trans isomerase C (NCBI ptt file), at 663,045 to 663,323
ppiC-1
SO0636: SO0636 - acetyltransferase, GNAT family (NCBI ptt file), at 663,421 to 663,915
SO0636
SO0637: SO0637 - conserved hypothetical protein (NCBI ptt file), at 663,912 to 664,187
SO0637
SO0638: SO0638 - hypothetical protein (NCBI ptt file), at 664,215 to 664,415
SO0638
SO0639: SO0639 - Collagenase family (NCBI ptt file), at 664,604 to 667,717
SO0639
Position (kb) 663
664
665 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 663.090 kb on - strand, within ppiC-1 at 663.200 kb on + strand, within ppiC-1 at 663.432 kb on - strand at 663.475 kb on + strand, within SO0636 at 663.485 kb on - strand, within SO0636 at 663.519 kb on - strand, within SO0636 at 663.588 kb on + strand, within SO0636 at 663.732 kb on + strand, within SO0636 at 663.930 kb on + strand at 664.114 kb on + strand, within SO0637 at 664.265 kb on + strand, within SO0638 at 664.293 kb on + strand, within SO0638 at 664.352 kb on + strand, within SO0638 at 664.393 kb on - strand, within SO0638 at 664.506 kb on + strand at 664.506 kb on + strand at 664.506 kb on + strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.514 kb on - strand at 664.624 kb on + strand at 664.630 kb on + strand at 664.633 kb on - strand at 664.645 kb on - strand at 664.705 kb on + strand at 664.768 kb on - strand at 664.779 kb on - strand at 664.794 kb on - strand at 664.876 kb on + strand at 664.878 kb on + strand at 664.897 kb on + strand at 664.897 kb on + strand at 664.904 kb on + strand at 664.978 kb on + strand, within SO0639 at 664.987 kb on - strand, within SO0639 at 665.025 kb on - strand, within SO0639 at 665.082 kb on - strand, within SO0639 at 665.095 kb on - strand, within SO0639 at 665.106 kb on - strand, within SO0639 at 665.107 kb on - strand, within SO0639
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 663,090 - ppiC-1 SO0635 0.16 -1.3 663,200 + ppiC-1 SO0635 0.56 -1.9 663,432 - +2.1 663,475 + SO0636 0.11 +4.3 663,485 - SO0636 0.13 +1.2 663,519 - SO0636 0.20 +0.1 663,588 + SO0636 0.34 +0.6 663,732 + SO0636 0.63 -1.6 663,930 + +0.2 664,114 + SO0637 0.73 -2.5 664,265 + SO0638 0.25 -1.1 664,293 + SO0638 0.39 -1.6 664,352 + SO0638 0.68 -1.1 664,393 - SO0638 0.89 -0.8 664,506 + -0.2 664,506 + -1.3 664,506 + -1.1 664,514 - +1.1 664,514 - -0.8 664,514 - -1.1 664,514 - -0.2 664,514 - -0.2 664,514 - -0.2 664,514 - -1.0 664,514 - -1.3 664,514 - +0.2 664,624 + +1.0 664,630 + -0.5 664,633 - +0.1 664,645 - +1.2 664,705 + -1.6 664,768 - -1.1 664,779 - -1.5 664,794 - +0.2 664,876 + +0.1 664,878 + +1.1 664,897 + +1.2 664,897 + -0.1 664,904 + -0.9 664,978 + SO0639 0.12 -0.9 664,987 - SO0639 0.12 -2.2 665,025 - SO0639 0.14 +0.0 665,082 - SO0639 0.15 -0.2 665,095 - SO0639 0.16 -1.6 665,106 - SO0639 0.16 -0.8 665,107 - SO0639 0.16 -0.0
Or see this region's nucleotide sequence