Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sspA and sspB overlap by 1 nucleotides sspB and pabA are separated by 154 nucleotides pabA and SO0614 are separated by 172 nucleotides
SO0611: sspA - stringent starvation protein a (NCBI ptt file), at 636,395 to 637,024
sspA
SO0612: sspB - stringent starvation protein b (NCBI ptt file), at 637,024 to 637,461
sspB
SO0613: pabA - para-aminobenzoate synthase glutamine amidotransferase, component II (NCBI ptt file), at 637,616 to 638,191
pabA
SO0614: SO0614 - dipeptidyl peptidase IV, putative (NCBI ptt file), at 638,364 to 640,844
SO0614
Position (kb) 637
638
639 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 636.717 kb on - strand, within sspA at 636.727 kb on - strand, within sspA at 636.845 kb on + strand, within sspA at 636.878 kb on + strand, within sspA at 636.878 kb on + strand, within sspA at 636.898 kb on + strand, within sspA at 636.934 kb on - strand, within sspA at 637.064 kb on - strand at 637.587 kb on + strand at 637.587 kb on + strand at 637.587 kb on + strand at 637.587 kb on + strand at 637.587 kb on + strand at 637.595 kb on - strand at 637.659 kb on - strand at 637.737 kb on + strand, within pabA at 637.742 kb on + strand, within pabA at 637.772 kb on - strand, within pabA at 637.857 kb on - strand, within pabA at 638.009 kb on + strand, within pabA at 638.056 kb on + strand, within pabA at 638.088 kb on + strand, within pabA at 638.090 kb on + strand, within pabA at 638.152 kb on - strand at 638.244 kb on + strand at 638.315 kb on - strand at 638.321 kb on + strand at 638.321 kb on + strand at 638.329 kb on - strand at 638.329 kb on - strand at 638.366 kb on - strand at 638.422 kb on - strand at 638.447 kb on + strand at 638.472 kb on + strand at 638.674 kb on + strand, within SO0614 at 638.682 kb on - strand, within SO0614 at 638.737 kb on - strand, within SO0614 at 638.750 kb on + strand, within SO0614 at 638.758 kb on - strand, within SO0614 at 638.800 kb on + strand, within SO0614 at 638.908 kb on + strand, within SO0614
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 636,717 - sspA SO0611 0.51 -0.1 636,727 - sspA SO0611 0.53 +2.7 636,845 + sspA SO0611 0.71 +0.3 636,878 + sspA SO0611 0.77 +0.7 636,878 + sspA SO0611 0.77 -0.3 636,898 + sspA SO0611 0.80 +0.7 636,934 - sspA SO0611 0.86 +0.3 637,064 - +1.7 637,587 + -0.1 637,587 + -1.4 637,587 + -0.3 637,587 + -1.3 637,587 + -1.1 637,595 - -1.4 637,659 - +0.5 637,737 + pabA SO0613 0.21 -1.4 637,742 + pabA SO0613 0.22 +3.4 637,772 - pabA SO0613 0.27 +1.3 637,857 - pabA SO0613 0.42 +3.1 638,009 + pabA SO0613 0.68 +0.5 638,056 + pabA SO0613 0.76 -1.0 638,088 + pabA SO0613 0.82 -0.3 638,090 + pabA SO0613 0.82 -0.3 638,152 - -1.5 638,244 + +0.4 638,315 - -0.7 638,321 + +0.7 638,321 + -1.7 638,329 - -0.1 638,329 - +1.1 638,366 - -1.3 638,422 - -0.4 638,447 + -1.9 638,472 + +0.8 638,674 + SO0614 0.12 -0.2 638,682 - SO0614 0.13 +0.9 638,737 - SO0614 0.15 +0.0 638,750 + SO0614 0.16 -0.4 638,758 - SO0614 0.16 -1.8 638,800 + SO0614 0.18 -0.4 638,908 + SO0614 0.22 +0.1
Or see this region's nucleotide sequence