Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0560.2 and SO0562 are separated by 221 nucleotides SO0562 and SO0563 are separated by 94 nucleotides
SO0560.2: SO0560.2 - hypothetical small-conductance mechanosensitive channel (NCBI ptt file), at 582,643 to 583,932
SO0560.2
SO0562: SO0562 - hypothetical protein (NCBI ptt file), at 584,154 to 584,483
SO0562
SO0563: SO0563 - hypothetical protein (NCBI ptt file), at 584,578 to 584,763
SO0563
Position (kb) 584
585 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 583.203 kb on - strand, within SO0560.2 at 583.234 kb on - strand, within SO0560.2 at 583.285 kb on + strand, within SO0560.2 at 583.288 kb on - strand, within SO0560.2 at 583.293 kb on - strand, within SO0560.2 at 583.353 kb on + strand, within SO0560.2 at 583.361 kb on - strand, within SO0560.2 at 583.361 kb on - strand, within SO0560.2 at 583.398 kb on + strand, within SO0560.2 at 583.398 kb on + strand, within SO0560.2 at 583.406 kb on - strand, within SO0560.2 at 583.455 kb on + strand, within SO0560.2 at 583.464 kb on - strand, within SO0560.2 at 583.464 kb on - strand, within SO0560.2 at 583.578 kb on + strand, within SO0560.2 at 583.636 kb on + strand, within SO0560.2 at 583.636 kb on + strand, within SO0560.2 at 583.636 kb on + strand, within SO0560.2 at 583.636 kb on + strand, within SO0560.2 at 583.644 kb on - strand, within SO0560.2 at 583.644 kb on - strand, within SO0560.2 at 583.644 kb on - strand, within SO0560.2 at 583.644 kb on - strand, within SO0560.2 at 583.727 kb on + strand, within SO0560.2 at 583.732 kb on + strand, within SO0560.2 at 583.742 kb on + strand, within SO0560.2 at 583.742 kb on + strand, within SO0560.2 at 583.743 kb on - strand, within SO0560.2 at 583.747 kb on + strand, within SO0560.2 at 583.831 kb on + strand at 583.839 kb on - strand at 583.841 kb on + strand at 583.890 kb on + strand at 583.897 kb on + strand at 583.897 kb on + strand at 583.897 kb on + strand at 583.898 kb on - strand at 583.898 kb on - strand at 583.905 kb on - strand at 583.905 kb on - strand at 583.927 kb on + strand at 583.930 kb on + strand at 583.934 kb on + strand at 583.943 kb on - strand at 583.979 kb on + strand at 583.985 kb on - strand at 583.986 kb on - strand at 584.047 kb on + strand at 584.047 kb on + strand at 584.047 kb on + strand at 584.047 kb on + strand at 584.047 kb on + strand at 584.047 kb on + strand at 584.047 kb on + strand at 584.047 kb on + strand at 584.055 kb on - strand at 584.055 kb on - strand at 584.055 kb on - strand at 584.055 kb on - strand at 584.055 kb on - strand at 584.055 kb on - strand at 584.055 kb on - strand at 584.055 kb on - strand at 584.066 kb on + strand at 584.081 kb on + strand at 584.081 kb on + strand at 584.081 kb on + strand at 584.232 kb on + strand, within SO0562 at 584.467 kb on + strand at 584.518 kb on + strand at 584.518 kb on + strand at 584.519 kb on + strand at 584.526 kb on - strand at 584.551 kb on - strand at 584.587 kb on + strand at 584.592 kb on + strand at 584.592 kb on + strand at 584.600 kb on - strand, within SO0563 at 584.611 kb on + strand, within SO0563 at 584.748 kb on + strand at 584.748 kb on + strand at 584.756 kb on - strand at 584.756 kb on - strand at 584.758 kb on + strand at 584.761 kb on - strand at 584.778 kb on + strand at 584.786 kb on - strand at 584.789 kb on + strand at 584.832 kb on - strand at 584.839 kb on - strand at 584.840 kb on + strand at 584.890 kb on - strand at 584.919 kb on + strand at 584.919 kb on + strand at 584.919 kb on + strand at 584.920 kb on + strand at 584.927 kb on - strand at 584.927 kb on - strand at 584.927 kb on - strand at 584.927 kb on - strand at 584.928 kb on - strand at 584.935 kb on + strand at 584.970 kb on - strand at 585.008 kb on - strand at 585.091 kb on - strand at 585.111 kb on - strand at 585.139 kb on + strand at 585.147 kb on - strand at 585.147 kb on - strand at 585.152 kb on - strand at 585.214 kb on - strand at 585.220 kb on - strand at 585.220 kb on - strand at 585.227 kb on - strand at 585.228 kb on + strand at 585.446 kb on - strand at 585.448 kb on - strand at 585.476 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 583,203 - SO0560.2 0.43 +0.2 583,234 - SO0560.2 0.46 -0.1 583,285 + SO0560.2 0.50 +0.8 583,288 - SO0560.2 0.50 -0.4 583,293 - SO0560.2 0.50 +0.6 583,353 + SO0560.2 0.55 +0.4 583,361 - SO0560.2 0.56 +0.7 583,361 - SO0560.2 0.56 -1.1 583,398 + SO0560.2 0.59 +1.5 583,398 + SO0560.2 0.59 +0.1 583,406 - SO0560.2 0.59 -1.0 583,455 + SO0560.2 0.63 -2.1 583,464 - SO0560.2 0.64 -0.3 583,464 - SO0560.2 0.64 -1.3 583,578 + SO0560.2 0.72 +0.9 583,636 + SO0560.2 0.77 -0.5 583,636 + SO0560.2 0.77 +0.6 583,636 + SO0560.2 0.77 -0.6 583,636 + SO0560.2 0.77 -1.0 583,644 - SO0560.2 0.78 -1.9 583,644 - SO0560.2 0.78 -1.7 583,644 - SO0560.2 0.78 +0.4 583,644 - SO0560.2 0.78 -0.7 583,727 + SO0560.2 0.84 +0.2 583,732 + SO0560.2 0.84 -1.2 583,742 + SO0560.2 0.85 +0.0 583,742 + SO0560.2 0.85 +0.2 583,743 - SO0560.2 0.85 -0.0 583,747 + SO0560.2 0.86 +0.6 583,831 + +1.1 583,839 - -0.6 583,841 + +0.8 583,890 + -0.6 583,897 + -0.9 583,897 + +1.1 583,897 + -0.4 583,898 - +1.8 583,898 - -1.8 583,905 - -0.9 583,905 - -1.2 583,927 + -0.7 583,930 + +0.7 583,934 + -0.6 583,943 - +0.4 583,979 + -0.6 583,985 - -0.6 583,986 - +1.1 584,047 + -0.5 584,047 + +1.6 584,047 + -0.9 584,047 + +0.8 584,047 + +0.9 584,047 + +0.1 584,047 + +0.3 584,047 + +1.0 584,055 - +1.7 584,055 - +0.5 584,055 - -0.3 584,055 - +0.3 584,055 - -1.2 584,055 - -0.0 584,055 - +0.2 584,055 - -0.5 584,066 + -0.5 584,081 + -0.5 584,081 + -2.1 584,081 + -1.5 584,232 + SO0562 0.24 -2.1 584,467 + +0.6 584,518 + +1.7 584,518 + -1.3 584,519 + +1.3 584,526 - +0.1 584,551 - +5.8 584,587 + -1.8 584,592 + -0.3 584,592 + +0.8 584,600 - SO0563 0.12 -0.3 584,611 + SO0563 0.18 -1.3 584,748 + +0.6 584,748 + -0.6 584,756 - +0.6 584,756 - +0.5 584,758 + +0.2 584,761 - -2.1 584,778 + -1.3 584,786 - -1.8 584,789 + -1.7 584,832 - +0.4 584,839 - -0.6 584,840 + +0.5 584,890 - +1.4 584,919 + -1.0 584,919 + +0.3 584,919 + -0.2 584,920 + -0.6 584,927 - +1.5 584,927 - -0.4 584,927 - -0.5 584,927 - +2.0 584,928 - +2.1 584,935 + +0.6 584,970 - +1.0 585,008 - -0.2 585,091 - -0.0 585,111 - +0.6 585,139 + +0.7 585,147 - +1.5 585,147 - +0.7 585,152 - +0.4 585,214 - +1.5 585,220 - -1.6 585,220 - -0.7 585,227 - -1.4 585,228 + +0.8 585,446 - -0.2 585,448 - +0.7 585,476 + -0.8
Or see this region's nucleotide sequence