Strain Fitness in Shewanella oneidensis MR-1 around SO0555

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
573,774	-		SO0553	0.35	-0.2
573,774	-		SO0553	0.35	+1.3
573,774	-		SO0553	0.35	+1.6
573,778	+		SO0553	0.36	+1.2
573,784	-		SO0553	0.38	-0.7
573,877	+		SO0553	0.64	+2.2
573,885	-		SO0553	0.66	-0.6
573,979	+				-2.3
573,991	+				+1.4
573,991	+				+0.5
574,142	+				-0.8
574,150	-				+0.6
574,199	-				-0.9
574,199	-				-0.6
574,257	+				+0.6
574,257	+				-0.5
574,265	-				+0.9
574,265	-				+1.1
574,267	+				-1.5
574,267	+				+0.2
574,270	+				+0.1
574,270	+				-0.6
574,270	+				-0.5
574,275	-				+0.7
574,278	-				+1.7
574,282	-		SO0554	0.10	-1.8
574,333	-		SO0554	0.20	+0.7
574,364	+		SO0554	0.26	+0.6
574,499	-		SO0554	0.52	-0.9
574,757	+				+0.7
574,774	-				-0.3
574,870	+				-0.3
574,880	+				+0.8
574,881	-				+1.7
574,891	+				-1.6
574,891	+				-0.1
574,891	+				-0.8
574,895	-				+0.1
574,899	-				-0.1
574,899	-				-0.7
574,912	+				-0.1
574,912	+				+1.0
574,920	-				-0.5
574,940	+		SO0555	0.10	-0.6
574,978	-		SO0555	0.12	-0.6
574,980	+		SO0555	0.13	+0.3
574,987	+		SO0555	0.13	-0.4
574,995	+		SO0555	0.13	-0.4
575,203	-		SO0555	0.25	+2.9
575,215	+		SO0555	0.26	+0.9
575,215	+		SO0555	0.26	+0.1
575,223	-		SO0555	0.26	+1.7
575,223	-		SO0555	0.26	+1.7
575,250	+		SO0555	0.28	+2.0
575,250	+		SO0555	0.28	-0.8
575,250	+		SO0555	0.28	-0.1
575,258	-		SO0555	0.28	+0.3
575,258	-		SO0555	0.28	+0.5
575,259	+		SO0555	0.28	-0.2
575,289	-		SO0555	0.30	-0.2
575,384	+		SO0555	0.36	-1.0
575,491	+		SO0555	0.42	+0.7
575,543	+		SO0555	0.45	-2.8
575,553	+		SO0555	0.45	+1.0
575,575	-		SO0555	0.46	-0.5
575,606	+		SO0555	0.48	+0.4
575,627	+		SO0555	0.49	+0.6
575,627	-		SO0555	0.49	+1.8
575,635	-		SO0555	0.50	-0.3
575,665	+		SO0555	0.52	-1.0
575,671	+		SO0555	0.52	+0.7
575,681	+		SO0555	0.52	-1.7
575,702	+		SO0555	0.54	-1.6
575,703	+		SO0555	0.54	+0.2
575,791	-		SO0555	0.59	+0.2
575,842	+		SO0555	0.62	+0.1
575,904	+		SO0555	0.65	+0.0
576,007	+		SO0555	0.71	-0.4
576,007	+		SO0555	0.71	-1.4
576,007	+		SO0555	0.71	+0.7
576,008	-		SO0555	0.71	-1.4
576,039	+		SO0555	0.73	-0.8
576,047	-		SO0555	0.73	-1.6
576,047	-		SO0555	0.73	+1.8
576,060	+		SO0555	0.74	-0.7
576,062	+		SO0555	0.74	-1.8
576,070	-		SO0555	0.75	-2.7
576,091	+		SO0555	0.76	+0.5
576,096	+		SO0555	0.76	+1.8
576,099	-		SO0555	0.76	-0.2
576,192	-		SO0555	0.82	+0.4
576,208	+		SO0555	0.83	-2.3
576,268	-		SO0555	0.86	+1.0
576,279	-		SO0555	0.87	-2.1
576,385	+				-0.4
576,385	+				-2.2
576,400	+				-0.8
576,408	-				-0.9
576,408	-				+1.0
576,408	-				+0.2
576,408	-				-2.0
576,499	+				-0.5
576,507	-				-1.4
576,545	+				-0.5
576,545	+				+0.1
576,545	+				-1.0
576,553	-				+0.6
576,553	-				+0.0
576,553	-				-1.2
576,680	-				+0.8
576,682	+				-0.5
576,682	+				-1.2
576,722	-		SO0556	0.22	-0.3
576,736	+		SO0556	0.27	+0.6
576,804	+		SO0556	0.49	+1.9
576,967	-				-0.4
577,007	+				-1.6
577,008	-				+1.5
577,046	+				-2.1
577,061	+				+1.0
577,076	+				-1.4
577,158	-		SO0557	0.16	+1.1
577,158	-		SO0557	0.16	-0.6
577,214	-		SO0557	0.23	-0.8
577,389	+		SO0557	0.42	-1.3
577,389	+		SO0557	0.42	-0.6
577,389	+		SO0557	0.42	-0.7
577,389	+		SO0557	0.42	-0.5