Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0362 and SO0363 are separated by 158 nucleotides SO0363 and SO0364 are separated by 7 nucleotides
SO0362: SO0362 - hypothetical protein (NCBI ptt file), at 371,943 to 373,493
SO0362
SO0363: SO0363 - hypothetical protein (NCBI ptt file), at 373,652 to 374,533
SO0363
SO0364: SO0364 - conserved hypothetical protein (NCBI ptt file), at 374,541 to 375,581
SO0364
Position (kb) 373
374
375 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 372.662 kb on - strand, within SO0362 at 372.662 kb on - strand, within SO0362 at 372.684 kb on + strand, within SO0362 at 372.725 kb on + strand, within SO0362 at 372.776 kb on + strand, within SO0362 at 373.076 kb on + strand, within SO0362 at 373.149 kb on - strand, within SO0362 at 373.149 kb on - strand, within SO0362 at 373.149 kb on - strand, within SO0362 at 373.177 kb on + strand, within SO0362 at 373.214 kb on + strand, within SO0362 at 373.214 kb on + strand, within SO0362 at 373.235 kb on + strand, within SO0362 at 373.270 kb on + strand, within SO0362 at 373.299 kb on - strand, within SO0362 at 373.429 kb on + strand at 373.437 kb on - strand at 373.487 kb on - strand at 373.525 kb on + strand at 373.525 kb on + strand at 373.728 kb on + strand at 373.728 kb on + strand at 373.728 kb on + strand at 373.728 kb on + strand at 373.728 kb on + strand at 373.728 kb on + strand at 373.736 kb on - strand at 373.736 kb on - strand at 373.736 kb on - strand at 373.736 kb on - strand at 373.737 kb on - strand at 373.830 kb on - strand, within SO0363 at 373.931 kb on + strand, within SO0363 at 373.944 kb on + strand, within SO0363 at 374.089 kb on - strand, within SO0363 at 374.109 kb on - strand, within SO0363 at 374.127 kb on - strand, within SO0363 at 374.137 kb on - strand, within SO0363 at 374.411 kb on + strand, within SO0363 at 374.430 kb on + strand, within SO0363 at 374.430 kb on + strand, within SO0363 at 374.433 kb on - strand, within SO0363 at 374.438 kb on - strand, within SO0363 at 374.467 kb on - strand at 374.630 kb on + strand at 374.665 kb on - strand, within SO0364 at 374.693 kb on + strand, within SO0364 at 374.745 kb on - strand, within SO0364 at 374.770 kb on + strand, within SO0364 at 374.770 kb on + strand, within SO0364 at 374.778 kb on - strand, within SO0364 at 374.799 kb on + strand, within SO0364 at 374.812 kb on - strand, within SO0364 at 375.018 kb on + strand, within SO0364 at 375.026 kb on + strand, within SO0364 at 375.026 kb on + strand, within SO0364 at 375.034 kb on - strand, within SO0364 at 375.237 kb on + strand, within SO0364 at 375.403 kb on + strand, within SO0364 at 375.411 kb on - strand, within SO0364 at 375.524 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 372,662 - SO0362 0.46 -2.1 372,662 - SO0362 0.46 +0.1 372,684 + SO0362 0.48 +3.6 372,725 + SO0362 0.50 +0.0 372,776 + SO0362 0.54 +0.4 373,076 + SO0362 0.73 -0.1 373,149 - SO0362 0.78 -0.6 373,149 - SO0362 0.78 +1.8 373,149 - SO0362 0.78 +0.8 373,177 + SO0362 0.80 +1.7 373,214 + SO0362 0.82 +1.3 373,214 + SO0362 0.82 -0.2 373,235 + SO0362 0.83 +0.8 373,270 + SO0362 0.86 +1.7 373,299 - SO0362 0.87 -0.5 373,429 + -0.7 373,437 - -1.4 373,487 - -3.0 373,525 + +0.5 373,525 + -0.6 373,728 + +2.6 373,728 + +0.9 373,728 + -0.6 373,728 + +0.4 373,728 + +0.8 373,728 + +1.4 373,736 - -1.0 373,736 - +2.2 373,736 - +0.3 373,736 - -1.3 373,737 - -0.9 373,830 - SO0363 0.20 -0.5 373,931 + SO0363 0.32 +2.1 373,944 + SO0363 0.33 +0.0 374,089 - SO0363 0.50 -1.7 374,109 - SO0363 0.52 +0.7 374,127 - SO0363 0.54 -0.5 374,137 - SO0363 0.55 +0.3 374,411 + SO0363 0.86 -0.7 374,430 + SO0363 0.88 +0.6 374,430 + SO0363 0.88 -2.5 374,433 - SO0363 0.89 +0.3 374,438 - SO0363 0.89 -0.2 374,467 - -1.7 374,630 + +0.6 374,665 - SO0364 0.12 -0.2 374,693 + SO0364 0.15 +0.6 374,745 - SO0364 0.20 +0.7 374,770 + SO0364 0.22 +0.1 374,770 + SO0364 0.22 -0.7 374,778 - SO0364 0.23 +0.1 374,799 + SO0364 0.25 +1.3 374,812 - SO0364 0.26 -1.1 375,018 + SO0364 0.46 +0.0 375,026 + SO0364 0.47 +0.1 375,026 + SO0364 0.47 -1.1 375,034 - SO0364 0.47 -0.2 375,237 + SO0364 0.67 -0.4 375,403 + SO0364 0.83 +1.2 375,411 - SO0364 0.84 -0.1 375,524 + +0.3
Or see this region's nucleotide sequence