Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0341 and SO0342 are separated by 256 nucleotides SO0342 and acnA are separated by 86 nucleotides
SO0341: SO0341 - sensory box protein (NCBI ptt file), at 341,460 to 346,007
SO0341
SO0342: SO0342 - conserved hypothetical protein (NCBI ptt file), at 346,264 to 347,457
SO0342
SO0343: acnA - aconitate hydratase 1 (NCBI ptt file), at 347,544 to 350,147
acnA
Position (kb) 346
347
348 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 345.304 kb on + strand, within SO0341 at 345.312 kb on - strand, within SO0341 at 345.337 kb on + strand, within SO0341 at 345.337 kb on + strand, within SO0341 at 345.376 kb on - strand, within SO0341 at 345.387 kb on - strand, within SO0341 at 345.584 kb on - strand at 345.596 kb on + strand at 345.657 kb on + strand at 345.727 kb on - strand at 345.762 kb on + strand at 345.805 kb on - strand at 345.805 kb on - strand at 345.805 kb on - strand at 345.870 kb on + strand at 345.911 kb on - strand at 345.911 kb on - strand at 345.913 kb on + strand at 345.913 kb on + strand at 345.921 kb on - strand at 345.950 kb on + strand at 345.958 kb on - strand at 345.978 kb on + strand at 345.978 kb on + strand at 345.978 kb on + strand at 345.986 kb on - strand at 345.986 kb on - strand at 345.986 kb on - strand at 345.991 kb on - strand at 346.049 kb on + strand at 346.100 kb on + strand at 346.134 kb on + strand at 346.190 kb on - strand at 346.192 kb on + strand at 346.230 kb on + strand at 346.261 kb on + strand at 346.261 kb on + strand at 346.268 kb on + strand at 346.277 kb on - strand at 346.325 kb on + strand at 346.333 kb on - strand at 346.403 kb on - strand, within SO0342 at 346.670 kb on - strand, within SO0342 at 346.670 kb on - strand, within SO0342 at 346.702 kb on - strand, within SO0342 at 346.710 kb on + strand, within SO0342 at 346.743 kb on + strand, within SO0342 at 346.743 kb on + strand, within SO0342 at 346.743 kb on + strand, within SO0342 at 346.751 kb on - strand, within SO0342 at 346.935 kb on - strand, within SO0342 at 347.051 kb on + strand, within SO0342 at 347.148 kb on - strand, within SO0342 at 347.184 kb on - strand, within SO0342 at 347.237 kb on - strand, within SO0342 at 347.285 kb on + strand, within SO0342 at 347.297 kb on + strand, within SO0342 at 347.354 kb on + strand at 347.362 kb on - strand at 347.362 kb on - strand at 347.428 kb on + strand at 347.649 kb on - strand at 347.696 kb on - strand at 347.740 kb on - strand at 347.795 kb on + strand at 347.876 kb on - strand, within acnA at 347.889 kb on + strand, within acnA at 347.897 kb on - strand, within acnA at 347.901 kb on + strand, within acnA at 347.907 kb on + strand, within acnA at 347.909 kb on - strand, within acnA at 347.951 kb on + strand, within acnA at 347.980 kb on + strand, within acnA at 348.102 kb on - strand, within acnA at 348.231 kb on + strand, within acnA at 348.343 kb on + strand, within acnA at 348.407 kb on + strand, within acnA at 348.412 kb on + strand, within acnA at 348.412 kb on + strand, within acnA at 348.415 kb on - strand, within acnA at 348.420 kb on - strand, within acnA at 348.420 kb on - strand, within acnA at 348.420 kb on - strand, within acnA at 348.420 kb on - strand, within acnA
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 345,304 + SO0341 0.85 -0.4 345,312 - SO0341 0.85 +0.2 345,337 + SO0341 0.85 -0.2 345,337 + SO0341 0.85 -0.1 345,376 - SO0341 0.86 -1.1 345,387 - SO0341 0.86 -0.6 345,584 - +3.2 345,596 + +1.3 345,657 + -0.8 345,727 - +1.6 345,762 + -1.1 345,805 - -1.4 345,805 - -1.1 345,805 - -0.8 345,870 + +0.4 345,911 - -1.0 345,911 - -1.7 345,913 + +2.2 345,913 + +0.7 345,921 - -0.8 345,950 + -0.0 345,958 - -1.4 345,978 + -0.4 345,978 + -0.7 345,978 + +2.6 345,986 - -0.7 345,986 - +0.2 345,986 - +2.0 345,991 - -0.6 346,049 + -2.0 346,100 + -0.2 346,134 + -1.8 346,190 - -1.1 346,192 + +0.2 346,230 + +0.9 346,261 + +1.0 346,261 + +1.1 346,268 + +0.0 346,277 - -0.2 346,325 + +1.3 346,333 - -1.0 346,403 - SO0342 0.12 +0.6 346,670 - SO0342 0.34 -0.4 346,670 - SO0342 0.34 +2.0 346,702 - SO0342 0.37 +2.6 346,710 + SO0342 0.37 -2.2 346,743 + SO0342 0.40 +0.6 346,743 + SO0342 0.40 -0.9 346,743 + SO0342 0.40 +2.6 346,751 - SO0342 0.41 -2.0 346,935 - SO0342 0.56 +2.6 347,051 + SO0342 0.66 -0.7 347,148 - SO0342 0.74 -0.4 347,184 - SO0342 0.77 +0.3 347,237 - SO0342 0.81 -0.4 347,285 + SO0342 0.86 +1.6 347,297 + SO0342 0.87 -1.3 347,354 + +1.0 347,362 - -0.2 347,362 - +0.3 347,428 + -0.2 347,649 - +2.6 347,696 - -0.6 347,740 - +1.6 347,795 + -0.0 347,876 - acnA SO0343 0.13 -1.0 347,889 + acnA SO0343 0.13 +1.6 347,897 - acnA SO0343 0.14 +1.0 347,901 + acnA SO0343 0.14 +0.6 347,907 + acnA SO0343 0.14 +0.3 347,909 - acnA SO0343 0.14 +0.6 347,951 + acnA SO0343 0.16 +0.3 347,980 + acnA SO0343 0.17 +1.6 348,102 - acnA SO0343 0.21 -0.0 348,231 + acnA SO0343 0.26 +1.6 348,343 + acnA SO0343 0.31 +1.6 348,407 + acnA SO0343 0.33 +2.6 348,412 + acnA SO0343 0.33 +3.6 348,412 + acnA SO0343 0.33 -1.5 348,415 - acnA SO0343 0.33 +1.6 348,420 - acnA SO0343 0.34 +1.8 348,420 - acnA SO0343 0.34 -0.9 348,420 - acnA SO0343 0.34 -1.7 348,420 - acnA SO0343 0.34 -1.2
Or see this region's nucleotide sequence