Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0296 and SO0297 are separated by 18 nucleotides SO0297 and gmhA overlap by 4 nucleotides gmhA and SO0299 are separated by 106 nucleotides SO0299 and SO0300 overlap by 4 nucleotides
SO0296: SO0296 - integral membrane domain protein (NCBI ptt file), at 302,102 to 303,025
SO0296
SO0297: SO0297 - lipoprotein, putative (NCBI ptt file), at 303,044 to 303,610
SO0297
SO0298: gmhA - phosphoheptose isomerase (NCBI ptt file), at 303,607 to 304,200
gmhA
SO0299: SO0299 - conserved hypothetical protein TIGR00252 (NCBI ptt file), at 304,307 to 304,633
SO0299
SO0300: SO0300 - lipoprotein, putative (NCBI ptt file), at 304,630 to 306,489
SO0300
Position (kb) 303
304
305 Strain fitness (log2 ratio) -2
-1
0
1
2 at 302.623 kb on - strand, within SO0296 at 302.675 kb on + strand, within SO0296 at 302.691 kb on - strand, within SO0296 at 302.697 kb on + strand, within SO0296 at 302.697 kb on + strand, within SO0296 at 302.707 kb on + strand, within SO0296 at 302.715 kb on - strand, within SO0296 at 302.722 kb on + strand, within SO0296 at 302.728 kb on - strand, within SO0296 at 302.752 kb on - strand, within SO0296 at 302.767 kb on + strand, within SO0296 at 302.862 kb on + strand, within SO0296 at 302.999 kb on + strand at 303.001 kb on + strand at 303.020 kb on + strand at 303.021 kb on - strand at 303.021 kb on - strand at 303.111 kb on + strand, within SO0297 at 303.124 kb on - strand, within SO0297 at 303.190 kb on + strand, within SO0297 at 303.313 kb on + strand, within SO0297 at 303.339 kb on + strand, within SO0297 at 303.360 kb on - strand, within SO0297 at 303.550 kb on - strand, within SO0297 at 303.566 kb on - strand at 303.600 kb on + strand at 303.799 kb on + strand, within gmhA at 303.809 kb on + strand, within gmhA at 304.090 kb on + strand, within gmhA at 304.571 kb on + strand, within SO0299 at 304.579 kb on - strand, within SO0299 at 304.593 kb on - strand, within SO0299 at 304.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 302,623 - SO0296 0.56 +0.6 302,675 + SO0296 0.62 +1.0 302,691 - SO0296 0.64 +0.9 302,697 + SO0296 0.64 +0.2 302,697 + SO0296 0.64 +2.6 302,707 + SO0296 0.65 -0.6 302,715 - SO0296 0.66 -0.6 302,722 + SO0296 0.67 -0.9 302,728 - SO0296 0.68 +0.6 302,752 - SO0296 0.70 +0.5 302,767 + SO0296 0.72 -0.8 302,862 + SO0296 0.82 -2.6 302,999 + -0.7 303,001 + -0.5 303,020 + +0.4 303,021 - +2.0 303,021 - -1.1 303,111 + SO0297 0.12 -1.1 303,124 - SO0297 0.14 -0.0 303,190 + SO0297 0.26 -0.4 303,313 + SO0297 0.47 -0.7 303,339 + SO0297 0.52 -1.3 303,360 - SO0297 0.56 +0.7 303,550 - SO0297 0.89 -0.1 303,566 - +0.3 303,600 + +0.4 303,799 + gmhA SO0298 0.32 -2.0 303,809 + gmhA SO0298 0.34 -2.0 304,090 + gmhA SO0298 0.81 -0.3 304,571 + SO0299 0.81 -0.5 304,579 - SO0299 0.83 -0.1 304,593 - SO0299 0.87 +0.9 304,627 + -1.3
Or see this region's nucleotide sequence