Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0181 and SO0182 are separated by 111 nucleotides SO0182 and SO0183 overlap by 4 nucleotides SO0183 and SO0184 are separated by 85 nucleotides SO0184 and SO0185 are separated by 39 nucleotides
SO0181: SO0181 - hypothetical protein (NCBI ptt file), at 186,395 to 187,441
SO0181
SO0182: SO0182 - hypothetical protein (NCBI ptt file), at 187,553 to 187,840
SO0182
SO0183: SO0183 - acetyltransferase, GNAT family (NCBI ptt file), at 187,837 to 188,319
SO0183
SO0184: SO0184 - hypothetical microcystin dependent protein (NCBI ptt file), at 188,405 to 188,956
SO0184
SO0185: SO0185 - hypothetical microcystin dependent protein (NCBI ptt file), at 188,996 to 189,526
SO0185
Position (kb) 187
188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 186.844 kb on - strand, within SO0181 at 186.847 kb on + strand, within SO0181 at 186.861 kb on - strand, within SO0181 at 186.910 kb on + strand, within SO0181 at 186.923 kb on - strand, within SO0181 at 186.995 kb on + strand, within SO0181 at 186.995 kb on - strand, within SO0181 at 187.039 kb on - strand, within SO0181 at 187.151 kb on + strand, within SO0181 at 187.151 kb on - strand, within SO0181 at 187.168 kb on + strand, within SO0181 at 187.176 kb on + strand, within SO0181 at 187.190 kb on - strand, within SO0181 at 187.205 kb on - strand, within SO0181 at 187.205 kb on - strand, within SO0181 at 187.218 kb on + strand, within SO0181 at 187.276 kb on + strand, within SO0181 at 187.276 kb on + strand, within SO0181 at 187.276 kb on + strand, within SO0181 at 187.276 kb on + strand, within SO0181 at 187.276 kb on + strand, within SO0181 at 187.276 kb on + strand, within SO0181 at 187.276 kb on + strand, within SO0181 at 187.283 kb on - strand, within SO0181 at 187.284 kb on - strand, within SO0181 at 187.284 kb on - strand, within SO0181 at 187.284 kb on - strand, within SO0181 at 187.321 kb on + strand, within SO0181 at 187.321 kb on + strand, within SO0181 at 187.321 kb on + strand, within SO0181 at 187.321 kb on + strand, within SO0181 at 187.321 kb on + strand, within SO0181 at 187.342 kb on - strand at 187.347 kb on - strand at 187.350 kb on - strand at 187.350 kb on - strand at 187.399 kb on + strand at 187.407 kb on - strand at 187.623 kb on - strand, within SO0182 at 187.658 kb on - strand, within SO0182 at 187.662 kb on + strand, within SO0182 at 187.672 kb on - strand, within SO0182 at 187.673 kb on + strand, within SO0182 at 187.689 kb on + strand, within SO0182 at 187.689 kb on + strand, within SO0182 at 187.689 kb on + strand, within SO0182 at 187.697 kb on + strand, within SO0182 at 187.697 kb on - strand, within SO0182 at 187.697 kb on - strand, within SO0182 at 187.699 kb on + strand, within SO0182 at 187.699 kb on + strand, within SO0182 at 187.707 kb on - strand, within SO0182 at 187.707 kb on - strand, within SO0182 at 187.707 kb on - strand, within SO0182 at 187.730 kb on + strand, within SO0182 at 187.730 kb on + strand, within SO0182 at 187.730 kb on + strand, within SO0182 at 187.738 kb on - strand, within SO0182 at 187.738 kb on - strand, within SO0182 at 187.756 kb on + strand, within SO0182 at 187.760 kb on + strand, within SO0182 at 187.835 kb on + strand at 187.835 kb on + strand at 187.835 kb on + strand at 187.835 kb on + strand at 187.858 kb on - strand at 187.860 kb on + strand at 187.860 kb on + strand at 187.860 kb on + strand at 187.867 kb on - strand at 187.867 kb on - strand at 187.867 kb on - strand at 187.867 kb on - strand at 187.868 kb on - strand at 187.868 kb on - strand at 187.868 kb on - strand at 187.868 kb on - strand at 187.868 kb on - strand at 187.868 kb on - strand at 187.868 kb on - strand at 187.868 kb on - strand at 187.868 kb on - strand at 187.917 kb on + strand, within SO0183 at 187.922 kb on + strand, within SO0183 at 187.922 kb on + strand, within SO0183 at 187.922 kb on + strand, within SO0183 at 187.922 kb on + strand, within SO0183 at 187.922 kb on + strand, within SO0183 at 187.922 kb on + strand, within SO0183 at 187.922 kb on + strand, within SO0183 at 187.922 kb on + strand, within SO0183 at 187.922 kb on + strand, within SO0183 at 187.922 kb on + strand, within SO0183 at 187.924 kb on + strand, within SO0183 at 187.927 kb on + strand, within SO0183 at 187.927 kb on + strand, within SO0183 at 187.927 kb on + strand, within SO0183 at 187.927 kb on + strand, within SO0183 at 187.930 kb on - strand, within SO0183 at 187.930 kb on - strand, within SO0183 at 187.930 kb on - strand, within SO0183 at 187.930 kb on - strand, within SO0183 at 187.930 kb on - strand, within SO0183 at 187.930 kb on - strand, within SO0183 at 187.930 kb on - strand, within SO0183 at 187.930 kb on - strand, within SO0183 at 187.930 kb on - strand, within SO0183 at 187.932 kb on - strand at 187.935 kb on - strand, within SO0183 at 187.935 kb on - strand, within SO0183 at 187.935 kb on - strand, within SO0183 at 187.935 kb on - strand, within SO0183 at 187.935 kb on - strand, within SO0183 at 188.027 kb on + strand, within SO0183 at 188.038 kb on + strand, within SO0183 at 188.046 kb on - strand, within SO0183 at 188.046 kb on - strand, within SO0183 at 188.046 kb on - strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.129 kb on + strand, within SO0183 at 188.137 kb on - strand, within SO0183 at 188.137 kb on - strand, within SO0183 at 188.137 kb on - strand, within SO0183 at 188.137 kb on - strand, within SO0183 at 188.137 kb on - strand, within SO0183 at 188.137 kb on - strand, within SO0183 at 188.137 kb on - strand, within SO0183 at 188.137 kb on - strand, within SO0183 at 188.137 kb on - strand, within SO0183 at 188.137 kb on - strand, within SO0183 at 188.138 kb on + strand, within SO0183 at 188.139 kb on - strand, within SO0183 at 188.139 kb on - strand, within SO0183 at 188.142 kb on - strand, within SO0183 at 188.142 kb on - strand, within SO0183 at 188.142 kb on - strand, within SO0183 at 188.144 kb on - strand, within SO0183 at 188.147 kb on - strand, within SO0183 at 188.151 kb on + strand, within SO0183 at 188.157 kb on - strand, within SO0183 at 188.160 kb on - strand, within SO0183 at 188.203 kb on + strand, within SO0183 at 188.234 kb on + strand, within SO0183 at 188.242 kb on - strand, within SO0183 at 188.243 kb on + strand, within SO0183 at 188.265 kb on + strand, within SO0183 at 188.290 kb on + strand at 188.315 kb on + strand at 188.323 kb on - strand at 188.323 kb on - strand at 188.323 kb on - strand at 188.329 kb on - strand at 188.331 kb on + strand at 188.388 kb on + strand at 188.388 kb on + strand at 188.388 kb on + strand at 188.396 kb on - strand at 188.442 kb on - strand at 188.442 kb on - strand at 188.453 kb on + strand at 188.453 kb on + strand at 188.453 kb on + strand at 188.459 kb on + strand at 188.461 kb on - strand, within SO0184 at 188.478 kb on - strand, within SO0184 at 188.525 kb on + strand, within SO0184 at 188.528 kb on + strand, within SO0184 at 188.533 kb on + strand, within SO0184 at 188.541 kb on - strand, within SO0184 at 188.564 kb on - strand, within SO0184 at 188.701 kb on + strand, within SO0184 at 188.701 kb on - strand, within SO0184 at 188.737 kb on + strand, within SO0184 at 188.744 kb on - strand, within SO0184 at 188.744 kb on - strand, within SO0184 at 188.745 kb on - strand, within SO0184 at 188.746 kb on - strand, within SO0184 at 188.766 kb on + strand, within SO0184 at 188.771 kb on + strand, within SO0184 at 188.779 kb on - strand, within SO0184 at 188.813 kb on - strand, within SO0184 at 188.815 kb on + strand, within SO0184 at 188.815 kb on + strand, within SO0184 at 188.823 kb on - strand, within SO0184 at 188.823 kb on - strand, within SO0184 at 188.828 kb on + strand, within SO0184 at 188.933 kb on + strand at 188.933 kb on + strand at 188.934 kb on + strand at 188.979 kb on + strand at 189.047 kb on + strand at 189.055 kb on - strand, within SO0185 at 189.064 kb on + strand, within SO0185 at 189.148 kb on - strand, within SO0185 at 189.150 kb on + strand, within SO0185 at 189.194 kb on + strand, within SO0185 at 189.196 kb on - strand, within SO0185 at 189.197 kb on - strand, within SO0185 at 189.206 kb on + strand, within SO0185 at 189.209 kb on - strand, within SO0185
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 186,844 - SO0181 0.43 +1.7 186,847 + SO0181 0.43 -0.5 186,861 - SO0181 0.45 -0.5 186,910 + SO0181 0.49 -1.2 186,923 - SO0181 0.50 -0.2 186,995 + SO0181 0.57 +1.3 186,995 - SO0181 0.57 -2.3 187,039 - SO0181 0.62 +0.8 187,151 + SO0181 0.72 -0.4 187,151 - SO0181 0.72 -0.9 187,168 + SO0181 0.74 -0.7 187,176 + SO0181 0.75 -0.2 187,190 - SO0181 0.76 +0.5 187,205 - SO0181 0.77 -0.7 187,205 - SO0181 0.77 +0.1 187,218 + SO0181 0.79 -0.0 187,276 + SO0181 0.84 +1.5 187,276 + SO0181 0.84 +1.5 187,276 + SO0181 0.84 -2.2 187,276 + SO0181 0.84 +1.2 187,276 + SO0181 0.84 +0.4 187,276 + SO0181 0.84 +0.1 187,276 + SO0181 0.84 -1.1 187,283 - SO0181 0.85 -0.4 187,284 - SO0181 0.85 +0.8 187,284 - SO0181 0.85 -1.0 187,284 - SO0181 0.85 -1.4 187,321 + SO0181 0.88 +0.6 187,321 + SO0181 0.88 -0.9 187,321 + SO0181 0.88 -0.9 187,321 + SO0181 0.88 -0.5 187,321 + SO0181 0.88 -1.8 187,342 - +0.5 187,347 - -0.1 187,350 - -1.8 187,350 - +0.3 187,399 + +0.2 187,407 - +1.4 187,623 - SO0182 0.24 +0.9 187,658 - SO0182 0.36 -1.1 187,662 + SO0182 0.38 -0.0 187,672 - SO0182 0.41 -2.6 187,673 + SO0182 0.42 +0.6 187,689 + SO0182 0.47 +1.2 187,689 + SO0182 0.47 +1.4 187,689 + SO0182 0.47 +0.7 187,697 + SO0182 0.50 +0.2 187,697 - SO0182 0.50 +1.0 187,697 - SO0182 0.50 +1.0 187,699 + SO0182 0.51 -0.1 187,699 + SO0182 0.51 +0.1 187,707 - SO0182 0.53 -0.8 187,707 - SO0182 0.53 +0.7 187,707 - SO0182 0.53 +1.1 187,730 + SO0182 0.61 -2.9 187,730 + SO0182 0.61 -0.9 187,730 + SO0182 0.61 -1.8 187,738 - SO0182 0.64 -0.8 187,738 - SO0182 0.64 -0.6 187,756 + SO0182 0.70 +1.9 187,760 + SO0182 0.72 +0.8 187,835 + -0.0 187,835 + +0.7 187,835 + +0.6 187,835 + +0.9 187,858 - +0.5 187,860 + +1.9 187,860 + -0.6 187,860 + +1.0 187,867 - +0.8 187,867 - +0.3 187,867 - -0.3 187,867 - -0.6 187,868 - +1.0 187,868 - +0.6 187,868 - +0.2 187,868 - +0.5 187,868 - -0.4 187,868 - -0.6 187,868 - -2.0 187,868 - +0.3 187,868 - +0.2 187,917 + SO0183 0.17 +0.4 187,922 + SO0183 0.18 -0.6 187,922 + SO0183 0.18 +0.3 187,922 + SO0183 0.18 -1.3 187,922 + SO0183 0.18 -2.8 187,922 + SO0183 0.18 +0.2 187,922 + SO0183 0.18 +1.6 187,922 + SO0183 0.18 -0.4 187,922 + SO0183 0.18 -1.2 187,922 + SO0183 0.18 -1.8 187,922 + SO0183 0.18 +1.2 187,924 + SO0183 0.18 +0.7 187,927 + SO0183 0.19 -0.4 187,927 + SO0183 0.19 +2.0 187,927 + SO0183 0.19 -0.1 187,927 + SO0183 0.19 +2.2 187,930 - SO0183 0.19 -2.3 187,930 - SO0183 0.19 -0.5 187,930 - SO0183 0.19 +0.4 187,930 - SO0183 0.19 -0.2 187,930 - SO0183 0.19 +0.5 187,930 - SO0183 0.19 +0.9 187,930 - SO0183 0.19 +1.7 187,930 - SO0183 0.19 -0.0 187,930 - SO0183 0.19 +1.2 187,932 - +0.2 187,935 - SO0183 0.20 +0.2 187,935 - SO0183 0.20 -1.6 187,935 - SO0183 0.20 -1.1 187,935 - SO0183 0.20 +0.5 187,935 - SO0183 0.20 +1.5 188,027 + SO0183 0.39 -0.2 188,038 + SO0183 0.42 +2.3 188,046 - SO0183 0.43 +1.2 188,046 - SO0183 0.43 +0.4 188,046 - SO0183 0.43 -0.1 188,129 + SO0183 0.60 -0.5 188,129 + SO0183 0.60 +2.6 188,129 + SO0183 0.60 +0.6 188,129 + SO0183 0.60 -0.9 188,129 + SO0183 0.60 +1.6 188,129 + SO0183 0.60 -1.6 188,129 + SO0183 0.60 -0.2 188,129 + SO0183 0.60 +0.8 188,129 + SO0183 0.60 +0.1 188,129 + SO0183 0.60 +0.4 188,129 + SO0183 0.60 +0.6 188,129 + SO0183 0.60 +0.3 188,129 + SO0183 0.60 -0.2 188,129 + SO0183 0.60 +0.8 188,129 + SO0183 0.60 +1.9 188,129 + SO0183 0.60 +0.7 188,129 + SO0183 0.60 -0.6 188,129 + SO0183 0.60 -1.6 188,129 + SO0183 0.60 -0.4 188,129 + SO0183 0.60 -2.8 188,137 - SO0183 0.62 -0.3 188,137 - SO0183 0.62 +0.2 188,137 - SO0183 0.62 -0.8 188,137 - SO0183 0.62 +0.5 188,137 - SO0183 0.62 -0.8 188,137 - SO0183 0.62 +0.2 188,137 - SO0183 0.62 +0.4 188,137 - SO0183 0.62 +0.8 188,137 - SO0183 0.62 +0.6 188,137 - SO0183 0.62 -1.7 188,138 + SO0183 0.62 -1.4 188,139 - SO0183 0.63 +1.5 188,139 - SO0183 0.63 -0.3 188,142 - SO0183 0.63 -1.6 188,142 - SO0183 0.63 -0.6 188,142 - SO0183 0.63 +1.0 188,144 - SO0183 0.64 -1.0 188,147 - SO0183 0.64 +1.9 188,151 + SO0183 0.65 -0.4 188,157 - SO0183 0.66 +0.9 188,160 - SO0183 0.67 -0.0 188,203 + SO0183 0.76 -1.1 188,234 + SO0183 0.82 -0.9 188,242 - SO0183 0.84 -1.2 188,243 + SO0183 0.84 -2.5 188,265 + SO0183 0.89 -1.6 188,290 + -1.7 188,315 + +1.4 188,323 - +0.8 188,323 - -0.2 188,323 - +0.8 188,329 - -0.2 188,331 + -0.8 188,388 + +0.6 188,388 + +0.9 188,388 + +0.0 188,396 - -0.9 188,442 - +0.1 188,442 - +0.8 188,453 + -1.6 188,453 + -0.8 188,453 + -2.9 188,459 + -0.6 188,461 - SO0184 0.10 +1.2 188,478 - SO0184 0.13 -1.0 188,525 + SO0184 0.22 -0.2 188,528 + SO0184 0.22 -0.3 188,533 + SO0184 0.23 +0.5 188,541 - SO0184 0.25 -0.6 188,564 - SO0184 0.29 +0.8 188,701 + SO0184 0.54 -0.1 188,701 - SO0184 0.54 -0.8 188,737 + SO0184 0.60 -0.1 188,744 - SO0184 0.61 +1.2 188,744 - SO0184 0.61 -1.8 188,745 - SO0184 0.62 +0.2 188,746 - SO0184 0.62 -1.0 188,766 + SO0184 0.65 -0.1 188,771 + SO0184 0.66 +1.2 188,779 - SO0184 0.68 -0.6 188,813 - SO0184 0.74 +1.6 188,815 + SO0184 0.74 -1.9 188,815 + SO0184 0.74 -0.8 188,823 - SO0184 0.76 -0.8 188,823 - SO0184 0.76 -1.3 188,828 + SO0184 0.77 -1.1 188,933 + -1.0 188,933 + +0.9 188,934 + +1.6 188,979 + -2.2 189,047 + -3.1 189,055 - SO0185 0.11 -1.0 189,064 + SO0185 0.13 -0.6 189,148 - SO0185 0.29 -0.7 189,150 + SO0185 0.29 +1.7 189,194 + SO0185 0.37 +1.2 189,196 - SO0185 0.38 -1.2 189,197 - SO0185 0.38 -0.9 189,206 + SO0185 0.40 +0.0 189,209 - SO0185 0.40 -0.3
Or see this region's nucleotide sequence