Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO_0134 and SO0135 are separated by 42 nucleotides SO0135 and SO0136 are separated by 26 nucleotides SO0136 and moeB are separated by 49 nucleotides
SO_0134: SO_0134 - putative SAM-dependent methyltransferase (RefSeq), at 141,383 to 142,309
_0134
SO0135: SO0135 - hemolysin protein, putative (NCBI ptt file), at 142,352 to 142,642
SO0135
SO0136: SO0136 - hypothetical protein (NCBI ptt file), at 142,669 to 143,331
SO0136
SO0137: moeB - molybdopterin biosynthesis MoeB protein (NCBI ptt file), at 143,381 to 144,142
moeB
Position (kb) 142
143 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 141.374 kb on - strand at 141.441 kb on - strand at 141.585 kb on + strand, within SO_0134 at 141.661 kb on + strand, within SO_0134 at 141.716 kb on - strand, within SO_0134 at 141.716 kb on - strand, within SO_0134 at 141.781 kb on + strand, within SO_0134 at 141.888 kb on + strand, within SO_0134 at 141.895 kb on - strand, within SO_0134 at 141.934 kb on + strand, within SO_0134 at 141.956 kb on - strand, within SO_0134 at 141.956 kb on - strand, within SO_0134 at 141.971 kb on - strand, within SO_0134 at 142.015 kb on - strand, within SO_0134 at 142.036 kb on + strand, within SO_0134 at 142.103 kb on + strand, within SO_0134 at 142.109 kb on + strand, within SO_0134 at 142.125 kb on + strand, within SO_0134 at 142.169 kb on - strand, within SO_0134 at 142.312 kb on - strand at 142.312 kb on - strand at 142.438 kb on - strand, within SO0135 at 142.453 kb on + strand, within SO0135 at 142.491 kb on + strand, within SO0135 at 142.550 kb on - strand, within SO0135 at 142.556 kb on - strand, within SO0135 at 142.701 kb on + strand at 142.906 kb on + strand, within SO0136 at 143.146 kb on - strand, within SO0136 at 143.177 kb on - strand, within SO0136 at 143.363 kb on + strand at 143.370 kb on + strand at 143.378 kb on - strand at 143.378 kb on - strand at 143.509 kb on + strand, within moeB at 143.581 kb on - strand, within moeB at 143.597 kb on - strand, within moeB
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 141,374 - +0.3 141,441 - -0.2 141,585 + SO_0134 0.22 -1.6 141,661 + SO_0134 0.30 -0.8 141,716 - SO_0134 0.36 -0.6 141,716 - SO_0134 0.36 +0.5 141,781 + SO_0134 0.43 -2.1 141,888 + SO_0134 0.54 -1.0 141,895 - SO_0134 0.55 +0.3 141,934 + SO_0134 0.59 +2.8 141,956 - SO_0134 0.62 -0.6 141,956 - SO_0134 0.62 -0.2 141,971 - SO_0134 0.63 -1.9 142,015 - SO_0134 0.68 +0.2 142,036 + SO_0134 0.70 +0.6 142,103 + SO_0134 0.78 +0.2 142,109 + SO_0134 0.78 +1.3 142,125 + SO_0134 0.80 -0.7 142,169 - SO_0134 0.85 +0.9 142,312 - +2.0 142,312 - +1.6 142,438 - SO0135 0.30 -0.9 142,453 + SO0135 0.35 -0.5 142,491 + SO0135 0.48 -0.1 142,550 - SO0135 0.68 -1.3 142,556 - SO0135 0.70 -1.2 142,701 + -1.6 142,906 + SO0136 0.36 +2.6 143,146 - SO0136 0.72 -0.1 143,177 - SO0136 0.77 +0.2 143,363 + +0.4 143,370 + -1.0 143,378 - -1.7 143,378 - +0.2 143,509 + moeB SO0137 0.17 +0.1 143,581 - moeB SO0137 0.26 -0.0 143,597 - moeB SO0137 0.28 -0.2
Or see this region's nucleotide sequence