Strain Fitness in Shewanella oneidensis MR-1 around SO0063

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
68,610	-		SO0061	0.44	+0.4
68,634	+		SO0061	0.49	-1.5
68,644	-		SO0061	0.51	+0.1
68,654	+		SO0061	0.53	-0.4
68,676	+		SO0061	0.58	-2.4
68,741	-		SO0061	0.72	+0.3
68,744	+		SO0061	0.72	+0.6
68,823	+		SO0061	0.89	-2.3
68,823	+		SO0061	0.89	+1.1
68,823	+		SO0061	0.89	-0.2
68,831	+				+0.9
68,832	+				+0.9
68,872	+				-0.4
68,882	+				-0.2
68,902	+				+1.7
68,902	+				-1.5
68,902	+				+0.5
68,910	-				+1.7
68,910	-				+0.8
68,939	+				-0.4
68,956	+				-0.4
69,170	-				-1.7
69,207	-				-0.2
69,370	-		SO0062	0.43	-0.3
69,372	-		SO0062	0.43	-1.8
69,372	-		SO0062	0.43	-1.7
69,372	-		SO0062	0.43	-0.7
69,372	-		SO0062	0.43	-1.0
69,372	-		SO0062	0.43	-0.9
69,372	-		SO0062	0.43	-1.6
69,372	-		SO0062	0.43	-0.8
69,372	-		SO0062	0.43	-1.2
69,372	-		SO0062	0.43	+0.5
69,497	-		SO0062	0.75	-0.2
69,501	+		SO0062	0.76	+2.6
69,509	-		SO0062	0.79	-0.2
69,509	-		SO0062	0.79	-0.7
69,509	-		SO0062	0.79	-0.9
69,509	-		SO0062	0.79	+0.1
69,509	-		SO0062	0.79	-0.2
69,509	-		SO0062	0.79	+1.3
69,509	-		SO0062	0.79	+1.4
69,509	-		SO0062	0.79	-1.7
69,564	-				+0.4
69,587	+				+0.0
69,606	+				+0.7
69,611	+				-1.4
69,612	+				-0.2
69,658	+				+0.2
69,673	-				-1.4
69,675	-				-0.7
69,695	+				-1.6
69,727	+		SO0063	0.11	-0.4
69,727	+		SO0063	0.11	-1.5
69,745	+		SO0063	0.12	+1.1
69,745	+		SO0063	0.12	+0.8
69,753	-		SO0063	0.13	+1.0
69,797	-		SO0063	0.16	-0.1
69,797	-		SO0063	0.16	+1.0
69,799	-		SO0063	0.16	-0.4
69,917	+		SO0063	0.25	+0.8
69,917	+		SO0063	0.25	+1.0
69,943	+		SO0063	0.27	+0.6
69,973	+		SO0063	0.29	-0.4
69,973	+		SO0063	0.29	+0.5
69,974	+		SO0063	0.30	+0.3
69,981	-		SO0063	0.30	-0.0
69,981	-		SO0063	0.30	-2.3
69,982	-		SO0063	0.30	+0.0
70,097	+		SO0063	0.39	-0.8
70,117	-		SO0063	0.40	+0.3
70,140	+		SO0063	0.42	-0.6
70,199	+		SO0063	0.47	-0.5
70,202	+		SO0063	0.47	+0.7
70,202	+		SO0063	0.47	+1.1
70,210	-		SO0063	0.48	-0.6
70,210	-		SO0063	0.48	+0.9
70,210	-		SO0063	0.48	+1.3
70,210	-		SO0063	0.48	-0.8
70,224	-		SO0063	0.49	+1.0
70,245	+		SO0063	0.50	-0.0
70,245	-		SO0063	0.50	-0.2
70,253	-		SO0063	0.51	-1.7
70,260	+		SO0063	0.51	-0.0
70,292	+		SO0063	0.54	-2.3
70,349	-		SO0063	0.58	+1.5
70,356	-		SO0063	0.59	+0.0
70,479	-				+0.6
70,532	-		SO0063	0.72	-0.5
70,571	+		SO0063	0.75	-0.2
70,592	-		SO0063	0.77	+1.2
70,640	+		SO0063	0.80	-1.5
70,640	+		SO0063	0.80	+1.7
70,673	+		SO0063	0.83	+0.0
70,673	+		SO0063	0.83	+2.0
70,728	-		SO0063	0.87	-0.5
70,756	+		SO0063	0.89	+0.7
70,790	+				-1.5
70,798	-				-2.3
70,855	-				-0.1
70,879	+				+0.7
70,879	+				-0.9
71,055	+				+0.5
71,063	-				-1.0
71,071	+				+0.1
71,076	+				-0.4
71,076	+				-0.0
71,088	+				+1.0
71,088	+				+0.4
71,088	+				-0.3
71,096	-				-0.9
71,096	-				-0.9
71,096	-				-1.1
71,238	+	mog	SO0065	0.19	-2.6
71,286	+	mog	SO0065	0.28	+0.9
71,384	+	mog	SO0065	0.47	-0.7
71,384	+	mog	SO0065	0.47	+0.5
71,384	+	mog	SO0065	0.47	-0.7
71,392	-	mog	SO0065	0.48	-0.9
71,392	-	mog	SO0065	0.48	-0.5
71,392	-	mog	SO0065	0.48	-1.5
71,392	-	mog	SO0065	0.48	-1.0
71,392	-	mog	SO0065	0.48	-0.6
71,404	-	mog	SO0065	0.51	-0.2
71,447	-	mog	SO0065	0.59	+0.1
71,507	+	mog	SO0065	0.70	-0.9
71,599	-	mog	SO0065	0.87	+0.1
71,609	-	mog	SO0065	0.89	-1.8
71,618	-				-2.3
71,645	-				-2.0
71,661	-				-2.4
71,729	+				-1.9