Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0057 and SO0058 are separated by 1 nucleotides SO0058 and kdpE are separated by 45 nucleotides kdpE and SO0060 are separated by 0 nucleotides
SO0057: SO0057 - potassium uptake protein, Trk family (NCBI ptt file), at 64,299 to 65,660
SO0057
SO0058: SO0058 - potassium uptake protein, putative (NCBI ptt file), at 65,662 to 66,360
SO0058
SO0059: kdpE - transcriptional regulatory protein KdpE (NCBI ptt file), at 66,406 to 67,095
kdpE
SO0060: SO0060 - sensor histidine kinase (NCBI ptt file), at 67,096 to 68,142
SO0060
Position (kb) 65
66
67 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 64.676 kb on + strand, within SO0057 at 64.684 kb on - strand, within SO0057 at 64.684 kb on - strand, within SO0057 at 64.684 kb on - strand, within SO0057 at 64.752 kb on - strand, within SO0057 at 64.754 kb on + strand, within SO0057 at 64.762 kb on - strand, within SO0057 at 64.762 kb on - strand, within SO0057 at 64.811 kb on + strand, within SO0057 at 64.811 kb on + strand, within SO0057 at 64.819 kb on + strand, within SO0057 at 64.819 kb on - strand, within SO0057 at 64.869 kb on - strand, within SO0057 at 64.910 kb on + strand, within SO0057 at 64.918 kb on + strand, within SO0057 at 64.923 kb on + strand, within SO0057 at 64.928 kb on + strand, within SO0057 at 64.928 kb on + strand, within SO0057 at 64.936 kb on - strand, within SO0057 at 64.936 kb on - strand, within SO0057 at 65.002 kb on - strand, within SO0057 at 65.020 kb on - strand, within SO0057 at 65.099 kb on + strand, within SO0057 at 65.165 kb on + strand, within SO0057 at 65.220 kb on - strand, within SO0057 at 65.262 kb on + strand, within SO0057 at 65.333 kb on + strand, within SO0057 at 65.341 kb on - strand, within SO0057 at 65.342 kb on + strand, within SO0057 at 65.385 kb on + strand, within SO0057 at 65.391 kb on - strand, within SO0057 at 65.403 kb on + strand, within SO0057 at 65.627 kb on + strand at 65.627 kb on + strand at 65.627 kb on + strand at 65.649 kb on + strand at 65.649 kb on + strand at 65.660 kb on + strand at 65.670 kb on + strand at 65.672 kb on - strand at 65.678 kb on - strand at 65.693 kb on - strand at 65.693 kb on - strand at 65.693 kb on - strand at 65.712 kb on + strand at 65.737 kb on - strand, within SO0058 at 65.739 kb on - strand, within SO0058 at 65.798 kb on + strand, within SO0058 at 65.798 kb on + strand, within SO0058 at 65.830 kb on - strand, within SO0058 at 65.850 kb on + strand, within SO0058 at 65.868 kb on - strand, within SO0058 at 65.871 kb on + strand, within SO0058 at 65.953 kb on + strand, within SO0058 at 65.955 kb on + strand, within SO0058 at 65.960 kb on + strand, within SO0058 at 65.963 kb on - strand, within SO0058 at 65.984 kb on - strand, within SO0058 at 65.999 kb on + strand, within SO0058 at 66.049 kb on - strand, within SO0058 at 66.073 kb on - strand, within SO0058 at 66.110 kb on + strand, within SO0058 at 66.132 kb on + strand, within SO0058 at 66.151 kb on + strand, within SO0058 at 66.182 kb on - strand at 66.197 kb on - strand, within SO0058 at 66.288 kb on + strand, within SO0058 at 66.310 kb on + strand at 66.310 kb on + strand at 66.311 kb on - strand at 66.318 kb on - strand at 66.331 kb on + strand at 66.343 kb on - strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.390 kb on + strand at 66.398 kb on - strand at 66.398 kb on - strand at 66.412 kb on - strand at 66.436 kb on + strand at 66.436 kb on + strand at 66.436 kb on + strand at 66.436 kb on + strand at 66.444 kb on - strand at 66.444 kb on - strand at 66.444 kb on - strand at 66.452 kb on + strand at 66.460 kb on + strand at 66.473 kb on + strand at 66.546 kb on + strand, within kdpE at 66.583 kb on - strand, within kdpE at 66.585 kb on - strand, within kdpE at 66.607 kb on - strand, within kdpE at 66.709 kb on - strand, within kdpE at 66.760 kb on - strand, within kdpE at 66.761 kb on - strand, within kdpE at 66.798 kb on + strand, within kdpE at 66.867 kb on + strand, within kdpE at 66.930 kb on + strand, within kdpE at 67.019 kb on - strand, within kdpE at 67.049 kb on - strand at 67.054 kb on + strand at 67.103 kb on - strand at 67.242 kb on - strand, within SO0060 at 67.273 kb on + strand, within SO0060 at 67.292 kb on + strand, within SO0060 at 67.293 kb on - strand, within SO0060 at 67.300 kb on - strand, within SO0060 at 67.310 kb on - strand, within SO0060 at 67.330 kb on - strand, within SO0060 at 67.331 kb on - strand, within SO0060 at 67.345 kb on + strand, within SO0060 at 67.352 kb on + strand, within SO0060 at 67.352 kb on + strand, within SO0060
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 64,676 + SO0057 0.28 -1.3 64,684 - SO0057 0.28 -1.0 64,684 - SO0057 0.28 +1.0 64,684 - SO0057 0.28 +0.6 64,752 - SO0057 0.33 -1.0 64,754 + SO0057 0.33 -0.1 64,762 - SO0057 0.34 -3.4 64,762 - SO0057 0.34 +1.3 64,811 + SO0057 0.38 +0.1 64,811 + SO0057 0.38 +1.0 64,819 + SO0057 0.38 -1.3 64,819 - SO0057 0.38 +0.7 64,869 - SO0057 0.42 +3.6 64,910 + SO0057 0.45 +0.7 64,918 + SO0057 0.45 -1.0 64,923 + SO0057 0.46 +2.0 64,928 + SO0057 0.46 -0.3 64,928 + SO0057 0.46 +1.3 64,936 - SO0057 0.47 +0.3 64,936 - SO0057 0.47 +0.3 65,002 - SO0057 0.52 -0.2 65,020 - SO0057 0.53 -1.1 65,099 + SO0057 0.59 -0.4 65,165 + SO0057 0.64 -0.4 65,220 - SO0057 0.68 +0.3 65,262 + SO0057 0.71 -1.7 65,333 + SO0057 0.76 -2.3 65,341 - SO0057 0.77 -1.0 65,342 + SO0057 0.77 +1.2 65,385 + SO0057 0.80 -0.7 65,391 - SO0057 0.80 +1.1 65,403 + SO0057 0.81 +1.0 65,627 + -0.6 65,627 + +0.7 65,627 + +1.7 65,649 + +1.1 65,649 + -1.1 65,660 + -0.1 65,670 + -0.2 65,672 - +1.3 65,678 - -1.1 65,693 - +0.2 65,693 - +1.0 65,693 - +0.4 65,712 + +0.1 65,737 - SO0058 0.11 +0.4 65,739 - SO0058 0.11 +0.7 65,798 + SO0058 0.19 +0.1 65,798 + SO0058 0.19 +1.7 65,830 - SO0058 0.24 +0.3 65,850 + SO0058 0.27 -1.2 65,868 - SO0058 0.29 +1.6 65,871 + SO0058 0.30 -2.9 65,953 + SO0058 0.42 +1.8 65,955 + SO0058 0.42 -1.4 65,960 + SO0058 0.43 +0.3 65,963 - SO0058 0.43 -0.3 65,984 - SO0058 0.46 +1.6 65,999 + SO0058 0.48 -0.8 66,049 - SO0058 0.55 -0.2 66,073 - SO0058 0.59 +1.3 66,110 + SO0058 0.64 -0.5 66,132 + SO0058 0.67 -1.7 66,151 + SO0058 0.70 +0.3 66,182 - -0.9 66,197 - SO0058 0.77 -0.2 66,288 + SO0058 0.90 +0.5 66,310 + +0.9 66,310 + +0.1 66,311 - +1.6 66,318 - -0.8 66,331 + -0.7 66,343 - +0.7 66,390 + +1.1 66,390 + +1.6 66,390 + -1.1 66,390 + +1.8 66,390 + +1.1 66,390 + -0.5 66,390 + -0.2 66,398 - +1.0 66,398 - -1.0 66,412 - -0.3 66,436 + +1.2 66,436 + -0.7 66,436 + +0.1 66,436 + +1.1 66,444 - -1.1 66,444 - +1.0 66,444 - -0.4 66,452 + +0.1 66,460 + +0.6 66,473 + +0.1 66,546 + kdpE SO0059 0.20 -0.1 66,583 - kdpE SO0059 0.26 -0.6 66,585 - kdpE SO0059 0.26 +0.2 66,607 - kdpE SO0059 0.29 +1.4 66,709 - kdpE SO0059 0.44 -0.5 66,760 - kdpE SO0059 0.51 +1.9 66,761 - kdpE SO0059 0.51 -1.0 66,798 + kdpE SO0059 0.57 -0.1 66,867 + kdpE SO0059 0.67 -1.1 66,930 + kdpE SO0059 0.76 +0.9 67,019 - kdpE SO0059 0.89 -0.7 67,049 - +1.1 67,054 + +1.8 67,103 - +0.8 67,242 - SO0060 0.14 -0.1 67,273 + SO0060 0.17 -0.7 67,292 + SO0060 0.19 -0.2 67,293 - SO0060 0.19 +2.6 67,300 - SO0060 0.19 +1.3 67,310 - SO0060 0.20 +0.0 67,330 - SO0060 0.22 +1.2 67,331 - SO0060 0.22 -0.2 67,345 + SO0060 0.24 -1.4 67,352 + SO0060 0.24 +0.5 67,352 + SO0060 0.24 +1.5
Or see this region's nucleotide sequence