Strain Fitness in Shewanella oneidensis MR-1 around SO0045

Experiment: C.elegans, mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	C.elegans, mixed culture-2
51,359	+				+0.6
51,367	-				+1.0
51,497	-				+1.6
51,498	-				-0.9
51,556	+				+1.0
51,665	-				+2.8
51,745	-				-0.2
51,815	+		SO0044	0.35	+0.3
51,823	-		SO0044	0.38	+1.1
51,823	-		SO0044	0.38	-2.1
51,832	+		SO0044	0.41	-1.5
51,832	+		SO0044	0.41	-0.4
51,840	-		SO0044	0.44	-1.7
51,906	+		SO0044	0.71	+0.3
52,028	-				+0.1
52,045	+				+0.0
52,289	+		SO0045	0.62	-1.7
52,351	-		SO0045	0.76	-0.3
52,353	+		SO0045	0.77	-0.4
52,519	-		SO0046	0.11	+0.8
52,589	+		SO0046	0.21	-1.7
52,709	+		SO0046	0.36	-0.2
52,759	+		SO0046	0.43	+2.6
52,830	+		SO0046	0.52	+0.1
52,870	-		SO0046	0.58	+0.4
52,935	+		SO0046	0.66	-2.0
52,935	+		SO0046	0.66	-0.0
52,943	-		SO0046	0.67	-0.5
52,943	-		SO0046	0.67	+1.1
52,966	+		SO0046	0.70	+1.1
52,990	+		SO0046	0.74	+0.4
52,998	-		SO0046	0.75	+2.3
53,005	+		SO0046	0.76	+0.8
53,013	-		SO0046	0.77	-2.8
53,013	-		SO0046	0.77	-0.9
53,022	+		SO0046	0.78	+2.0
53,030	-		SO0046	0.79	-1.7
53,142	-				-0.6
53,144	+				-0.9
53,152	-				+1.4
53,152	-				-2.1
53,254	-				-1.0
53,334	-		SO0047	0.11	+1.3
53,346	-		SO0047	0.12	+1.6
53,382	+		SO0047	0.15	-1.4
53,389	+		SO0047	0.16	+0.7
53,390	-		SO0047	0.16	-0.0
53,428	+		SO0047	0.19	-0.6
53,441	+		SO0047	0.20	-0.7