Experiment: C.elegans, mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sun and fmt are separated by 2 nucleotides fmt and def-1 are separated by 15 nucleotides def-1 and SO0033 are separated by 125 nucleotides
SO0030: sun - sun protein (NCBI ptt file), at 35,131 to 36,417
sun
SO0031: fmt - methionyl-tRNA formyltransferase (NCBI ptt file), at 36,420 to 37,376
fmt
SO0032: def-1 - polypeptide deformylase (NCBI ptt file), at 37,392 to 37,898
def-1
SO0033: SO0033 - LysM domain protein (NCBI ptt file), at 38,024 to 39,160
SO0033
Position (kb) 37
38 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 36.460 kb on - strand at 37.454 kb on - strand, within def-1 at 37.488 kb on - strand, within def-1 at 37.488 kb on - strand, within def-1 at 37.563 kb on - strand, within def-1 at 37.576 kb on - strand, within def-1 at 37.601 kb on - strand, within def-1 at 37.637 kb on - strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.822 kb on + strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.830 kb on - strand, within def-1 at 37.834 kb on + strand, within def-1 at 37.875 kb on + strand at 37.883 kb on - strand at 37.947 kb on + strand at 37.955 kb on - strand at 37.955 kb on - strand at 37.955 kb on - strand at 38.001 kb on - strand at 38.068 kb on - strand at 38.068 kb on - strand at 38.260 kb on + strand, within SO0033 at 38.265 kb on + strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.273 kb on - strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.287 kb on + strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.295 kb on - strand, within SO0033 at 38.330 kb on + strand, within SO0033 at 38.434 kb on - strand, within SO0033 at 38.454 kb on + strand, within SO0033 at 38.454 kb on + strand, within SO0033 at 38.476 kb on - strand, within SO0033 at 38.476 kb on - strand, within SO0033 at 38.483 kb on + strand, within SO0033 at 38.485 kb on + strand, within SO0033 at 38.543 kb on + strand, within SO0033 at 38.577 kb on + strand, within SO0033 at 38.585 kb on - strand, within SO0033 at 38.603 kb on + strand, within SO0033 at 38.712 kb on + strand, within SO0033 at 38.779 kb on + strand, within SO0033 at 38.779 kb on + strand, within SO0033 at 38.779 kb on + strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.787 kb on - strand, within SO0033 at 38.831 kb on + strand, within SO0033 at 38.836 kb on + strand, within SO0033 at 38.859 kb on + strand, within SO0033 at 38.862 kb on - strand, within SO0033 at 38.877 kb on - strand, within SO0033 at 38.882 kb on - strand, within SO0033
Per-strain Table
Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2 remove 36,460 - -0.1 37,454 - def-1 SO0032 0.12 +0.6 37,488 - def-1 SO0032 0.19 +0.3 37,488 - def-1 SO0032 0.19 +2.3 37,563 - def-1 SO0032 0.34 +1.3 37,576 - def-1 SO0032 0.36 +0.1 37,601 - def-1 SO0032 0.41 +1.3 37,637 - def-1 SO0032 0.48 +1.0 37,822 + def-1 SO0032 0.85 +3.2 37,822 + def-1 SO0032 0.85 +1.4 37,822 + def-1 SO0032 0.85 -0.4 37,822 + def-1 SO0032 0.85 +1.4 37,822 + def-1 SO0032 0.85 -0.6 37,822 + def-1 SO0032 0.85 +0.3 37,822 + def-1 SO0032 0.85 +0.5 37,822 + def-1 SO0032 0.85 +1.0 37,822 + def-1 SO0032 0.85 +1.6 37,830 - def-1 SO0032 0.86 +1.3 37,830 - def-1 SO0032 0.86 -0.0 37,830 - def-1 SO0032 0.86 +1.9 37,830 - def-1 SO0032 0.86 -0.1 37,830 - def-1 SO0032 0.86 +0.4 37,830 - def-1 SO0032 0.86 +0.9 37,830 - def-1 SO0032 0.86 +2.2 37,830 - def-1 SO0032 0.86 +1.3 37,830 - def-1 SO0032 0.86 +1.2 37,830 - def-1 SO0032 0.86 +0.5 37,830 - def-1 SO0032 0.86 +1.0 37,834 + def-1 SO0032 0.87 +0.3 37,875 + +1.0 37,883 - +0.3 37,947 + +2.6 37,955 - +0.3 37,955 - -2.4 37,955 - -2.6 38,001 - -0.8 38,068 - -1.4 38,068 - +1.3 38,260 + SO0033 0.21 -1.4 38,265 + SO0033 0.21 -0.1 38,273 - SO0033 0.22 -1.1 38,273 - SO0033 0.22 +0.9 38,273 - SO0033 0.22 +0.8 38,287 + SO0033 0.23 -0.9 38,287 + SO0033 0.23 -0.7 38,287 + SO0033 0.23 -1.7 38,295 - SO0033 0.24 -0.8 38,295 - SO0033 0.24 -0.3 38,295 - SO0033 0.24 -0.0 38,330 + SO0033 0.27 -0.1 38,434 - SO0033 0.36 +0.3 38,454 + SO0033 0.38 +1.1 38,454 + SO0033 0.38 +1.0 38,476 - SO0033 0.40 -0.5 38,476 - SO0033 0.40 -0.9 38,483 + SO0033 0.40 -1.1 38,485 + SO0033 0.41 +1.3 38,543 + SO0033 0.46 +0.3 38,577 + SO0033 0.49 +0.6 38,585 - SO0033 0.49 -1.1 38,603 + SO0033 0.51 +1.5 38,712 + SO0033 0.61 -0.2 38,779 + SO0033 0.66 +0.3 38,779 + SO0033 0.66 -2.3 38,779 + SO0033 0.66 -0.2 38,787 - SO0033 0.67 -0.1 38,787 - SO0033 0.67 -0.0 38,787 - SO0033 0.67 -0.3 38,787 - SO0033 0.67 +0.2 38,831 + SO0033 0.71 +1.0 38,836 + SO0033 0.71 +2.1 38,859 + SO0033 0.73 +0.3 38,862 - SO0033 0.74 -1.0 38,877 - SO0033 0.75 +0.6 38,882 - SO0033 0.75 +0.0
Or see this region's nucleotide sequence