Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3791

Experiment: Post-dosage t1 (Day 1) - Cage1C;Mouse1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-dosage t1 (Day 1) - Cage1C;Mouse1
4,924,132	+		BT3790	0.17	-1.7
4,924,134	+		BT3790	0.18	+0.2
4,924,134	+		BT3790	0.18	-2.4
4,924,137	+		BT3790	0.18	-0.5
4,924,146	-		BT3790	0.19	-1.9
4,924,154	-		BT3790	0.20	-0.9
4,924,177	+		BT3790	0.22	-1.7
4,924,178	-		BT3790	0.22	+0.9
4,924,178	-		BT3790	0.22	-1.4
4,924,198	-		BT3790	0.24	-1.5
4,924,198	-		BT3790	0.24	-1.5
4,924,203	+		BT3790	0.25	-0.0
4,924,204	-		BT3790	0.25	-2.1
4,924,229	-		BT3790	0.27	-1.9
4,924,266	+		BT3790	0.31	-0.5
4,924,316	-		BT3790	0.36	-2.2
4,924,333	-		BT3790	0.38	-0.9
4,924,346	+		BT3790	0.39	+0.6
4,924,347	-		BT3790	0.39	-0.0
4,924,349	-		BT3790	0.40	-0.0
4,924,349	-		BT3790	0.40	-1.8
4,924,351	-		BT3790	0.40	-1.4
4,924,400	+		BT3790	0.45	+0.3
4,924,400	+		BT3790	0.45	-1.8
4,924,401	-		BT3790	0.45	-3.0
4,924,401	-		BT3790	0.45	-0.9
4,924,404	+		BT3790	0.45	-2.3
4,924,404	+		BT3790	0.45	-0.3
4,924,457	+		BT3790	0.51	-1.8
4,924,468	-		BT3790	0.52	-1.8
4,924,478	-		BT3790	0.53	-3.3
4,924,478	-		BT3790	0.53	-1.5
4,924,478	-		BT3790	0.53	+0.2
4,924,509	-		BT3790	0.56	+0.1
4,924,528	-		BT3790	0.58	+1.3
4,924,573	+		BT3790	0.63	-0.0
4,924,574	-		BT3790	0.63	-2.9
4,924,577	+		BT3790	0.63	-1.6
4,924,578	-		BT3790	0.63	-0.1
4,924,578	-		BT3790	0.63	-0.7
4,924,583	-		BT3790	0.64	-0.2
4,924,594	+		BT3790	0.65	-0.9
4,924,595	-		BT3790	0.65	-1.8
4,924,601	+		BT3790	0.66	-1.9
4,924,602	-		BT3790	0.66	-0.3
4,924,604	-		BT3790	0.66	-0.3
4,924,648	-		BT3790	0.70	+1.7
4,924,653	-		BT3790	0.71	-0.7
4,924,653	-		BT3790	0.71	-1.1
4,924,653	-		BT3790	0.71	-2.5
4,924,688	-		BT3790	0.74	-4.2
4,924,788	-		BT3790	0.85	-0.3
4,924,790	-		BT3790	0.85	-1.0
4,924,790	-		BT3790	0.85	-1.3
4,924,790	-		BT3790	0.85	-1.4
4,924,824	-		BT3790	0.88	-1.2
4,924,824	-		BT3790	0.88	-1.1
4,924,840	+				-0.0
4,924,841	-				-1.0
4,924,843	+				+0.5
4,924,844	-				-1.3
4,924,844	-				-2.5
4,924,888	+				-1.0
4,924,896	+				-0.3
4,924,959	+				-0.7
4,925,007	-				-1.1
4,925,024	+				-1.4
4,925,025	-				-2.1
4,925,030	+				+0.2
4,925,049	-				-1.9
4,925,060	+				-1.9
4,925,061	-				-2.0
4,925,114	-				-0.3
4,925,114	-				-1.0
4,925,125	+				-1.1
4,925,125	+				-2.4
4,925,126	-				+1.8
4,925,126	-				-0.6
4,925,171	+		BT3791	0.10	-1.5
4,925,191	-		BT3791	0.11	-2.3
4,925,218	+		BT3791	0.13	+0.1
4,925,218	+		BT3791	0.13	-1.7
4,925,219	-		BT3791	0.13	-0.3
4,925,273	+		BT3791	0.16	-0.6
4,925,273	+		BT3791	0.16	-1.8
4,925,274	-		BT3791	0.16	-0.9
4,925,274	-		BT3791	0.16	+0.3
4,925,274	-		BT3791	0.16	-1.7
4,925,277	-		BT3791	0.16	-1.9
4,925,296	-		BT3791	0.18	-2.6
4,925,296	-		BT3791	0.18	+0.1
4,925,296	-		BT3791	0.18	-1.9
4,925,296	-		BT3791	0.18	-0.8
4,925,307	-		BT3791	0.18	-1.7
4,925,311	-		BT3791	0.19	+0.3
4,925,430	+		BT3791	0.26	-1.3
4,925,431	-		BT3791	0.26	-2.8
4,925,431	-		BT3791	0.26	-1.1
4,925,499	-		BT3791	0.30	-0.5
4,925,546	+		BT3791	0.33	-1.8
4,925,564	+		BT3791	0.34	-0.3
4,925,565	-		BT3791	0.34	-1.0
4,925,565	-		BT3791	0.34	-2.2
4,925,664	-		BT3791	0.40	-3.7
4,925,710	-		BT3791	0.43	-2.0
4,925,762	+		BT3791	0.46	-1.1
4,925,843	+		BT3791	0.51	-0.3
4,925,844	-		BT3791	0.51	-0.0
4,925,877	+		BT3791	0.53	-1.3
4,925,899	-		BT3791	0.54	-0.7
4,925,964	-		BT3791	0.58	-1.0
4,925,973	-		BT3791	0.59	-2.5
4,926,021	-		BT3791	0.62	+0.7
4,926,087	-		BT3791	0.66	+0.0
4,926,089	+		BT3791	0.66	-1.0
4,926,089	+		BT3791	0.66	-1.0
4,926,095	+		BT3791	0.66	-0.3
4,926,116	+		BT3791	0.68	-0.0
4,926,117	-		BT3791	0.68	-3.0
4,926,119	-		BT3791	0.68	-0.7
4,926,119	-		BT3791	0.68	-0.4
4,926,119	-		BT3791	0.68	-1.3
4,926,126	-		BT3791	0.68	-1.7
4,926,126	-		BT3791	0.68	-0.4
4,926,180	-		BT3791	0.72	-0.5
4,926,209	+		BT3791	0.73	-1.5
4,926,219	+		BT3791	0.74	-1.4
4,926,220	-		BT3791	0.74	-2.4
4,926,220	-		BT3791	0.74	-1.9
4,926,295	-		BT3791	0.79	+0.7
4,926,354	-		BT3791	0.82	+0.5
4,926,399	-		BT3791	0.85	-3.1
4,926,431	+		BT3791	0.87	-2.2
4,926,432	-		BT3791	0.87	-1.3
4,926,432	-		BT3791	0.87	-1.1
4,926,432	-		BT3791	0.87	-1.0
4,926,438	-		BT3791	0.87	-0.1
4,926,516	+				-0.5
4,926,517	-				-0.9
4,926,517	-				+0.7
4,926,561	-				+0.4
4,926,575	+				+0.3
4,926,639	-				-2.4
4,926,738	+				-2.8
4,926,738	+				-1.9
4,926,739	-				-1.3
4,926,777	+				-1.5
4,926,778	-				-1.6
4,926,778	-				-0.9
4,926,789	-				-1.4
4,926,811	-				-0.8
4,926,944	+		BT3792	0.18	+0.0
4,926,945	-		BT3792	0.18	-0.0
4,926,948	-		BT3792	0.18	-0.7
4,926,954	-		BT3792	0.18	-0.6
4,926,976	+		BT3792	0.20	-0.8
4,926,976	+		BT3792	0.20	-2.4
4,926,976	+		BT3792	0.20	-2.3
4,926,977	-		BT3792	0.20	-2.0
4,926,978	+		BT3792	0.20	+2.3
4,927,023	-		BT3792	0.23	-0.3
4,927,078	+		BT3792	0.26	-0.1
4,927,079	-		BT3792	0.26	-2.1
4,927,198	-		BT3792	0.34	-2.4
4,927,201	-		BT3792	0.34	+0.2
4,927,201	-		BT3792	0.34	-1.3
4,927,204	+		BT3792	0.34	+1.0
4,927,205	-		BT3792	0.34	-0.6
4,927,210	+		BT3792	0.35	-0.9
4,927,341	+		BT3792	0.43	-3.2
4,927,341	+		BT3792	0.43	-1.5
4,927,341	+		BT3792	0.43	-2.8
4,927,342	-		BT3792	0.43	-0.1
4,927,363	+		BT3792	0.44	-2.0
4,927,363	+		BT3792	0.44	-1.7
4,927,363	+		BT3792	0.44	-1.6
4,927,364	-		BT3792	0.44	-1.1
4,927,396	+		BT3792	0.46	-1.7
4,927,446	-		BT3792	0.50	-2.2
4,927,462	-		BT3792	0.51	-2.7
4,927,474	+		BT3792	0.51	-1.7
4,927,528	+		BT3792	0.55	-0.9
4,927,571	+		BT3792	0.57	-2.6
4,927,572	-		BT3792	0.58	-2.5
4,927,572	-		BT3792	0.58	-1.0
4,927,629	+		BT3792	0.61	-1.0